Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq254 176 5e-39 seq139 123 3e-23 >seq254 Length=19931 Score = 176 bits (194), Expect = 5e-39 Identities = 472/714 (66%), Gaps = 27/714 (4%) Strand=Plus/Plus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | ||| |||| | | ||||| ||||||| || || Sbjct 16329 AATTTTAATTTTGAAGAATTAGGAATAGGAGCATTAGATGAAGAATTTAAGACAATATTT 16388 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTT--CCTATCGAAATAATaaaaaaaTTAGGCTGTA 164509 ||| || | ||||| |||| | || || | | ||| | ||| | |||| || Sbjct 16389 AGAAGAACTTTTGCCAGTAGA--ATTTACCCAAATTATATAGTTAAACAGCTAGGTATTA 16446 Query 164510 AACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTC 164569 ||||| | || ||| || || | |||| ||||| ||| || ||||||||||| || Sbjct 16447 AACATGTTAAGGGACTTATACTGTATGGCCCTCCAGGTACAGGAAAAACATTAATCGCAA 16506 Query 164570 GATGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 || || | | || | || || | | || || |||||| |||| ||||| ||| | Sbjct 16507 GACAGATAGGTAAAACATTAAATGCAAGAGAACCA--AAAATTATTAACGGTCCAGAAAT 16564 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 ||| || ||||||||||| ||||||||| ||| || |||| || ||| | || ||||| Sbjct 16565 ATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTCGAAATTTATTTAAAGATGCTGA 16624 Query 164688 AGAAGAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 | |||| | ||| |||| || | | | ||||||| ||||| | | || || | Sbjct 16625 AATAGAATATAAACAAAG-TGGGGAAAATTCTTTATTACATATTATTATACTAGACGAAA 16683 Query 164747 TAGATGCTCTTTGCAAAAAACGTGGTGAT---------AATATTA------TTCATGATG 164791 | |||||| | || | | || | || || | || || | ||||| Sbjct 16684 TTGATGCTATATGTAGACAAAGAGGAAATTCCTCTTCCAGTAGTACTGGAGTAAATGATA 16743 Query 164792 CAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAAT-CCTTAAATAATATTTTA 164850 | || |||||||| ||||| ||||| ||||| || |||| ||||||||||| | Sbjct 16744 GTATAGTGAATCAGTTACTTTCCAAAATTGATGGAGT-GAATAGTTTAAATAATATACTT 16802 Query 164851 ATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGA 164910 || |||||||||| || | ||| | |||||||| || || ||| ||||||| | Sbjct 16803 CTTATAGGTATGACAAATAGGATAGATCTTATTGATGAAGCATTGTTAAGACCTGGAAGG 16862 Query 164911 TTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAA 164970 || ||||| | ||||||||| | || | || |||||| | ||||||| ||||| Sbjct 16863 TTTGAATTACATATAGAAATATCTCTTCCAAATAAGGAAGGAAGAATTCAAATATTAAAT 16922 Query 164971 GTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAA 165030 | ||| || |||| | || ||| |||| ||| ||||| || || | || Sbjct 16923 ATACATACAAAAAATATGAGAAAAAGTAATAAATTAAGTCCAGATGTTAATATAGAAGAA 16982 Query 165031 ATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||||| |||| ||||| | || || ||| | || || |||||| || Sbjct 16983 TTAGCTGAAAAAACACCAAATTTTTCAGGAGCAGAAATTGAAGGTTTAGTACGA 17036 >seq139 Length=46061 Score = 123 bits (136), Expect = 3e-23 Identities = 279/413 (68%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 6828 TATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCAT 6887 |||||||| ||| || ||||||| ||||| || || ||||| | |||| | Sbjct 36975 TATATGATTGTTATATATGTGAGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTGTAA 37034 Query 6888 ATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTAC 6947 | | ||||||||| | || || || | || ||||| || | ||| || || || Sbjct 37035 GTTACATACTTGAGCAAGCATGTAGGTGAAAATTGAGTAAGAGGCAATATTGAAGGGAAC 37094 Query 6948 ACCTAATCCCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAG 7006 ||| | || | ||| |||| |||||| ||| ||| ||||| | || | | Sbjct 37095 ACCAAGCCCTAAATCACAAGATCGTTGATA-CATGATACATGATAATTTCCCATCGAAAA 37153 Query 7007 CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGAT 7066 ||||||||| || || | |||||| || ||||| | | ||| | ||| | | Sbjct 37154 TATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAAATCCTTTACGT 37213 Query 7067 TCCAAGCAGTCATTAAAATACGTCTATCATTTGG---ATTTGTTTTTAATTTTGTTATAA 7123 |||| ||| || | ||| | |||| ||| |||| || | || ||| |||| Sbjct 37214 TCCATGCACACAAAATAATTCTTCTACTTAATGGTTCATTTTTTATCAAATTT---ATAA 37270 Query 7124 TTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACA-ATTTATATAATTA 7182 | ||| || |||||| || || | | ||||||||| || ||| |||| |||| | | Sbjct 37271 TATTTTTTAGTTGATCAATTCCTTTATTATCATAATTATCAT-ACATATTTGTATATTCA 37329 Query 7183 GCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTC 7235 ||||||||||||||||||||||| |||||||| |||||||||||| | |||| Sbjct 37330 GCTCCAAAATGTCTCCATTGAAAACCATAAATTGGACCTAAATCATTTACTTC 37382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595855412413200