Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq546 145 7e-30 >seq546 Length=57643 Score = 145 bits (160), Expect = 7e-30 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| ||||| || || ||||| ||||||||||| || || | ||||||||| Sbjct 55994 CTCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATC-- 56051 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| |||| ||| |||| || ||||| |||| |||||||||||||||||||| Sbjct 56052 TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGG 56111 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| || || | |||||| ||||| || | | || || | || Sbjct 56112 TGGAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTC 56171 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||||| ||||| || | ||||||||||| |||||||| Sbjct 56172 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56222 Score = 141 bits (156), Expect = 8e-29 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| ||||| || || || || ||||||||||| || || | ||||||||| Sbjct 56225 CTCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATC-- 56282 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| |||| |||||||| || ||||| |||| ||||||||||||||||| || Sbjct 56283 TGATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 56342 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| || || | |||||| ||||| || | | || || | || Sbjct 56343 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTC 56402 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||||||| ||||| || | ||||||||||| |||||||| Sbjct 56403 AACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56453 Score = 134 bits (148), Expect = 1e-26 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| | |||||||| ||||| || || ||||| ||||||||||| || || | Sbjct 55752 AAAAAATTAAAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGAT 55811 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||||||| | ||| |||| ||| |||| || ||||| |||| ||||||||| Sbjct 55812 GTTATAATC--TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTT 55869 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| || || || ||||| || || | |||||| ||||| || | | || Sbjct 55870 TGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTA 55929 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | |||||||| ||||| || | ||||||||||| |||||| Sbjct 55930 TCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGC 55989 Query 95006 AT 95007 || Sbjct 55990 AT 55991 Score = 123 bits (136), Expect = 2e-23 Identities = 122/156 (78%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| ||||| || || || || ||||||||||||||||| | ||||||||| Sbjct 56456 CTCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATC-- 56513 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| |||| ||| |||| || ||||| |||| ||||||||||||||||| || Sbjct 56514 TAATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 56573 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || || ||||| || || | |||||| ||||| || Sbjct 56574 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTAC 56609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278720693720