Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq621 109 9e-19 >seq621 Length=54537 Score = 109 bits (120), Expect = 9e-19 Identities = 176/247 (71%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||||||| | || || || ||| ||||||||||||||| || || || || | || | Sbjct 33623 TGGTATTTTATTTAACCATGAAAGTCCAAGAAGAGGTGAAACTTTCGTTAC-CAAAAAAA 33565 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATC--TTGGTAAT 194063 || || ||| ||| | | | ||| |||| | | | || | |||||||| Sbjct 33564 TA-ACCAGGGCTATTGCAAACATATGTAAACATACACAGTGTGTTCTAACCCTTGGTAAT 33506 Query 194064 CTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATG 194123 || || || | ||||| |||||||| ||||| |||||||| |||| |||| |||||| Sbjct 33505 ATTGATACTTATAGGGACTGGGGACATGCAAAAGATTATGTACAAGCAATGTACTTAATG 33446 Query 194124 TTGCAACAGGATGAACCCGATGATTATGTGAT-TGCTACAGGTGAACAGTATTCTGTTAG 194182 || |||||| |||||||| ||| ||| || |||| | |||||| |||||||||| Sbjct 33445 TTACAACAGAATGAACCCATAGATCTTGTCATATGCTCTAA-TGAACAACATTCTGTTAG 33387 Query 194183 AGACTTT 194189 ||| ||| Sbjct 33386 AGAGTTT 33380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807532719682120