Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq598 230 2e-55 seq1515 141 1e-28 >seq598 Length=26426 Score = 230 bits (254), Expect = 2e-55 Identities = 572/859 (67%), Gaps = 25/859 (3%) Strand=Plus/Plus Query 21149 AAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTT 21208 ||||| | ||| | | ||| | ||||| || ||| ||||||||| ||| | |||| Sbjct 2449 AAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTT 2508 Query 21209 TCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCA 21268 || ||||| ||||| ||||||| | || || | ||||| ||| ||| ||||||| Sbjct 2509 TCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTT 2568 Query 21269 GATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATA 21328 | | ||| ||||| |||||| | | ||||||| ||||||||||||||||||| Sbjct 2569 GCATAAAAAATTTTTGAACAACCTAAACATTCCAATAATCGATCTGCTACAAATTCTATA 2628 Query 21329 TATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAA 21388 || ||| |||||||| ||||||| || || || | ||| |||| || | Sbjct 2629 TACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATG 2688 Query 21389 AAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG 21448 |||||| |||| | || ||||| || |||||| | | | | | | || || Sbjct 2689 AAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAA--CAACTTCTTCT--GG 2744 Query 21449 GGATACAAT----AATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATC 21504 || | | ||| || | || ||||| |||||| ||| || |||||||| Sbjct 2745 TAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCTTCATC 2804 Query 21505 CCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA-TTAATCCTCTCTTTTTTAACC 21563 ||||| |||| ||||||| ||| || | || | | || || || | ||||| |||| Sbjct 2805 TCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCTGT-TTTTTAAACC 2863 Query 21564 AAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACT 21622 |||| |||| | |||| || || ||| | || || ||||| ||| ||| || Sbjct 2864 AAAAAATTG-CACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACA 2922 Query 21623 AATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT- 21681 | || ||| | ||| | | | |||| |||||||||| | ||||| ||| || Sbjct 2923 ATTCTTTCTGCAAATGAA---TTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTA 2979 Query 21682 TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG---AtttttttCATCTAC 21738 ||||| | | | | | | |||||||| | || | || | || || ||| Sbjct 2980 TTCTTAACTGCTGGTATATTT-TCAATAGCATGAAATAAATTTAAACGTTCTTTATC--- 3035 Query 21739 ATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGC 21798 ||| |||| ||| ||| |||| |||||||| ||||||| || Sbjct 3036 ATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGC 3095 Query 21799 TATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTG 21858 ||| |||||| |||||| | | || |||| | |||||| || ||||| | | Sbjct 3096 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAACTTAC 3154 Query 21859 -AGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTA 21917 |||||| ||||| |||||| |||||||| || ||||||||||| || | || ||| | Sbjct 3155 TAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAA 3214 Query 21918 TAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTA 21977 |||||| | ||| || || ||||||||| ||||| |||||| |||||||||||| Sbjct 3215 TAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTA 3274 Query 21978 CTTCTTCAGTTGTCCAAAA 21996 |||||||| ||||||||| Sbjct 3275 TTTCTTCAGCTGTCCAAAA 3293 >seq1515 Length=1449 Score = 141 bits (156), Expect = 1e-28 Identities = 201/283 (71%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||| ||||||| ||||||||||| | ||||| ||||| ||||| | | || Sbjct 567 ACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGC 508 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || ||| ||||| ||||| |||||| ||||| |||||||||||| Sbjct 507 TTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATC 448 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 ||| || ||||||||||| || | || ||||||||||| | ||| || | ||||||| Sbjct 447 ACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT 388 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 || | ||| ||||| |||||||||||| |||||||| |||||||| || Sbjct 387 TTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTC 328 Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||| |||||||| | | |||| | ||| |||||| || ||| Sbjct 327 AGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531885993211480