Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq546 365 6e-96 seq598 205 1e-47 seq1515 161 1e-34 >seq546 Length=57643 Score = 365 bits (404), Expect = 6e-96 Identities = 995/1516 (66%), Gaps = 33/1516 (2%) Strand=Plus/Plus Query 62314 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62373 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 62374 TATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62433 |||| || || |||||||| | || ||||| ||||| || || || | ||| ||||||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 62434 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62493 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 62494 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 62544 | ||| |||||||||| ||| | || | || Sbjct 4724 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4777 Query 62545 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62603 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4778 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4836 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4837 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4896 Query 62664 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62723 | |||| |||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4897 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4956 Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4957 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 5016 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||||||||| | ||||||||||| | | |||||| ||| | ||| | || Sbjct 5017 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 5076 Query 62844 TTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT---TACAAACATGTTCAAGGCAACA 62897 | | ||| ||||| ||| | ||| | |||||| | || |||| | Sbjct 5077 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 5136 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 5137 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 5196 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 5197 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 5256 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 ||||| | || |||| ||| ||||| || ||| || || ||| || ||| | Sbjct 5257 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 5316 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAAT 63134 || | || || || || ||| | || ||||| ||| ||| | ||| ||| Sbjct 5317 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 5373 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 ||| || || || ||||| | || || |||||||||| |||||||| || Sbjct 5374 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 5433 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| | Sbjct 5434 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 5493 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| |||||| | || ||| || || || ||| ||| | | ||| || ||| | Sbjct 5494 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5553 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | ||||| |||||||| ||||| | |||| || | ||| | ||| ||| Sbjct 5554 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCA 5613 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTT 63433 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| ||||| Sbjct 5614 CCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTT 5672 Query 63434 TGATATACCATTGGTACCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 63492 |||||||||||| || || ||||| | | | |||| |||| | || || Sbjct 5673 TGATATACCATTTGTTCCTCTTATATATGAATTTTGT-CCACGTATATCTTGTACTGCTA 5731 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 ||| || || ||||| ||||| || || || ||| | ||||| || ||| | || | Sbjct 5732 CACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTC 5791 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 | || || ||| | |||| |||| |||||| ||||| || | | | Sbjct 5792 CTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTG 5851 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 | || | ||||||||| || || | || || ||||| |||||| || | |||| | Sbjct 5852 TCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGAT 5911 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | || || | ||| |||| ||| | ||| || || | || || | ||||| || Sbjct 5912 ATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCA 5971 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 || || |||||||| | || || || || || ||| || || || |||| || | Sbjct 5972 AATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACG 6031 Query 63793 TTTTAAAACCAAAATA 63808 |||||||||||||||| Sbjct 6032 TTTTAAAACCAAAATA 6047 >seq598 Length=26426 Score = 205 bits (226), Expect = 1e-47 Identities = 569/860 (66%), Gaps = 22/860 (3%) Strand=Plus/Plus Query 32994 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33053 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2466 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2525 Query 33054 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 33113 ||||| | || || ||||| ||| ||| ||||| | ||| | |||||||| Sbjct 2526 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2585 Query 33114 AAATCCCAA---TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT 33170 | | || || ||| ||| |||| ||| || || ||||||||||| ||| | Sbjct 2586 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2642 Query 33171 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAG-TAAGAAAT-TCTTGTTCA 33228 | ||||||| || || | | | || |||| || || |||| |||| ||| Sbjct 2643 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT--TCA 2700 Query 33229 ATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AAT 33285 | || || ||| | | |||| | |||| |||||| | || ||| Sbjct 2701 ACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAAT 2760 Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345 ||| || | || ||||| ||||| || | || || ||||||||||||||| Sbjct 2761 AAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 2817 Query 33346 TCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 || || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2818 TCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTGCAC 2875 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33463 || ||| ||| | || ||||| || ||| || | || ||| ||| || Sbjct 2876 AAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA 2935 Query 33464 AACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 33523 | | |||| |||||| ||| ||||||| || || || || || || | Sbjct 2936 ATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTA 2995 Query 33524 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 33583 | |||| || |||| ||| | || ||| ||| |||||| | |||| |||| | Sbjct 2996 TATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAA 3055 Query 33584 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643 | | | ||| ||| |||| ||||| |||||||| | || || |||||| ||| || Sbjct 3056 TAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATT 3115 Query 33644 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACT 33702 | |||| || ||||| || |||||| | |||| | | | ||||||||||| ||| Sbjct 3116 TTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACT 3174 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 || || ||||| ||||||||||| || || |||||||| ||||||| |||||| | | Sbjct 3175 ATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCA 3234 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 ||| ||| | |||| || | ||| | |||| ||||| |||||| ||||||||||| Sbjct 3235 TTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAAT 3294 Query 33823 GATGCCTCTGCCTTTTTATA 33842 ||||| ||||| |||||||| Sbjct 3295 GATGCTTCTGCTTTTTTATA 3314 >seq1515 Length=1449 Score = 161 bits (178), Expect = 1e-34 Identities = 221/304 (73%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 ||| |||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || ||||| || || | |||| || | || ||||| ||| | ||||| || Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT--TTA 477 Query 33684 C--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 33741 | ||||||||||| |||||||| ||||| ||||||||||| || || ||||||||| Sbjct 476 CTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTT 417 Query 33742 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATC 33800 ||||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| Sbjct 416 ATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATC 358 Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 || |||||| | ||||||||||| || || || |||||||| | ||||| | ||| Sbjct 357 TATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGG 298 Query 33861 ATAT 33864 |||| Sbjct 297 ATAT 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622929858707320