Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq139 176 1e-38 seq546 174 4e-38 seq598 145 2e-29 >seq139 Length=46061 Score = 176 bits (194), Expect = 1e-38 Identities = 384/567 (68%), Gaps = 16/567 (3%) Strand=Plus/Minus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACTTCTG 111371 ||||||| || | ||||| ||| | || || ||| |||||| | |||||| | || Sbjct 37552 ATTTTCCCCTATTAACAACCAAGAAATTAT-TTATAAGAGGAATTATTGAAGAATTACTT 37494 Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAATGTAAAAATTTG 111430 |||||||| | || ||||||| |||| | ||| | |||||||| | ||| || Sbjct 37493 TGGTTTATAAGAGGGGAAACAAATGGAAAT-ATTTTGTTAAATAAAAATGTGAGAATATG 37435 Query 111431 GGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTG--TCGACAACGAAGAA 111488 ||| | ||||||| | | || ||| ||||| | | | || | || | |||| | Sbjct 37434 GGAAGCAAATGGAACTAGAGAATTTTTAGAT--AATAGAAATTTATTTGATAGAGAAGTA 37377 Query 111489 GGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC 111548 |||| | || ||| |||| || ||||||||| | || ||||| || || || | || Sbjct 37376 AATGATTTAGGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACAAAT 37317 Query 111549 ATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608 ||| | || |||||| | |||| ||||||| || | ||| | || || || Sbjct 37316 ATGTATGATAATTATGATAATAAAGGAATTGATCAACTAAAAAATATTATAAATTTGATA 37257 Query 111609 AAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAA 111668 || || | ||| | | | |||||| || ||||||||||| ||| | ||||| Sbjct 37256 AAAAATGAACCATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTAAAGGATTTGGAT 37197 Query 111669 AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 ||||||||| | ||||| |||||| || | ||||| |||||| | ||| |||| | Sbjct 37196 AAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTA 37137 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| |||||||| |||||| |||| | || ||||||||||| || |||||||| Sbjct 37136 TCATGTATCATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCCTTCAATATTGCC 37077 Query 111789 AGTTACGCACT----ACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGA 111844 |||| || | || ||| ||||| ||||| | || | |||| | || Sbjct 37076 TCTTACTCAATTTTCACCTACATGCTT----GCTCAAGTATGTAACTTACAACCTGCAGA 37021 Query 111845 ATTCATTCACGTTATCGGAGATGCGCA 111871 |||||| |||||| | ||| |||| || Sbjct 37020 ATTCATACACGTTTTAGGAAATGCTCA 36994 >seq546 Length=57643 Score = 174 bits (192), Expect = 4e-38 Identities = 603/931 (65%), Gaps = 16/931 (2%) Strand=Plus/Minus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| || | ||| ||| | || | || || ||| ||||| ||| | | Sbjct 6053 TATGATTATTTTGGTTTTAAAACGTTAGAAAGGTCATATTTATTGCGTATTAATAATAAA 5994 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| | ||| | || || ||| || ||||| | || | |||||||| |||| ||| Sbjct 5993 ATTATAGAAAGACCACAACATTTGATAATGAGAGTATCAATTGGTATACATTTAGATGAT 5934 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTG-CTCGTGTATTC-ACGCACGCCA 363559 | || || | ||||||||| | || | || | |||| || || || | Sbjct 5933 CTAGAAAAAGCATTAGAAACATATCATCTGAT--GTCACAAAAATATTTTACACATGCAA 5876 Query 363560 CGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAA 363619 | |||||| | | ||| | || || | | ||||||||||| || || ||| | ||| Sbjct 5875 CACCAACATTATTTAATTCAGGGACACCAAGACCACAGATGTCATCATGTTTTTTACTAT 5816 Query 363620 AAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTT 363679 ||||| | ||||| || || || || ||||| ||| | ||| | |||||| | || Sbjct 5815 GTATGAAAGCAGATTCGATTGAAGGAATTTTTGAAACATTAAAGCAATGTGCTTTGATAA 5756 Query 363680 CCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACA 363739 || | |||||| || ||||||||| | | || || | |||| ||| || || | Sbjct 5755 GTAAAACTGCAGGTGGTATTGGTGTAGCAGTACAAGATATACGTGGACAAAATTCATATA 5696 Query 363740 TTCGCGGCACAGGGGG-ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 | | || ||| || ||| || || || | || || ||| | | || ||| || || Sbjct 5695 TAAGAGGAACAAATGGTATA-TCAAACGGATTAGTACCAATGTTAAGAGTTTTTAACGAT 5637 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 || || || || || || || ||||||||||| | ||||| | ||||| | ||| | Sbjct 5636 ACAGCTAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATT 5577 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 || || ||| | ||||| ||||||||||| || | | ||||| || ||||| Sbjct 5576 GAACCATGGCATTCAGATATATTTGAGTTTCTAGATTTGAGAAAAAATCATGGTAAAGAA 5517 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 ||||| || || | ||| | || ||||| ||||||| | || |||||||| | Sbjct 5516 GAATTACGAGCTAGAGATTTATTTTATGCTGTTTGGGTACCAGATTTGTTTATGAAAAGA 5457 Query 363979 GTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 || | | | ||| |||||| || | | || ||| | |||||||||||| | || Sbjct 5456 GTTAAAGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTGAA 5397 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 ||||||||| || | || |||| ||||| |||||| || | ||| | Sbjct 5396 ACATGGGGTGAAGAATTTGAAAAATTATATGAAAAATATGAA---GAAGAAAATTTAGGA 5340 Query 364099 AAGACA-----ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 || | | ||| |||| || | |||||||||| || | | || || || | Sbjct 5339 AAAAAAACTGTATTAGCGCA-AG-ATTTATGGTTTGCTATTTTACAAAGTCAAATAGAAA 5282 Query 364154 CAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 |||| ||| ||||||||||| |||||||| || || || || || || | | Sbjct 5281 CAGGTGTACCATATATGTTGTATAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATT 5222 Query 364214 TTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 | || |||||| | || || |||||| || || || ||||| || | || || | Sbjct 5221 TAGGGACAATTAAATGTAGTAATCTATGTTGTGAAATAATCGAATATACATCACCAGATG 5162 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 | ||| || |||||| | || || || || Sbjct 5161 AAGTTGCTGTTTGTAACTTAGCATCTATTGC 5131 >seq598 Length=26426 Score = 145 bits (160), Expect = 2e-29 Identities = 578/891 (65%), Gaps = 23/891 (3%) Strand=Plus/Minus Query 22074 TCCGATTGTACACGAAGATATTTATGAAGAATACAAGAAAGCAGAAGCTTCCCTATGGGG 22133 ||| ||| || || |||| ||| || || || ||||||||||| || | ||| Sbjct 3345 TCCAATTTTATACCCAGATGTTTGGGATTTTTATAAAAAAGCAGAAGCATCATTTTGGAC 3286 Query 22134 TGTTTCCGAAATTGATATTTCCACTGATAAGACGGATTGGCCAAAACTTACAGAAAACGA 22193 | | ||||| ||| | || | |||| | |||| |||| | | ||||| || Sbjct 3285 AGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAAATTAAATGAAAATGA 3226 Query 22194 ACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGA 22253 | |||||||||| ||| || || ||||||| ||||| | || |||||||| || || Sbjct 3225 AAAACATTTTATTAAACATGTTTTAGCATTTTTTGCAGCTAGTGATGGTATAGTATTAGA 3166 Query 22254 GAATCTAGTGACTAATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGG 22313 ||| | | | ||| ||| | ||| ||||| |||| || | | || || Sbjct 3165 AAATTTGGCTAGTAAGTTTTTAAGAGAAGTTCAAATTACAGAAGCTAAAAAATTTTACTC 3106 Query 22314 TGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATAT--TCTA--TGATGCTACAGT 22369 | ||||| | ||||| | || | ||||| || | || | || || | | Sbjct 3105 ATTTCAAATAGCAGTAGAAAACATACATTCAGAAACGTACAGTTTACTTATTGATA-ATT 3047 Query 22370 CACTCGTAGAAGATAAAGACGAACAACGAAACTTATTCCGCGCGATTCGCACCATTCAAT 22429 | ||| |||||||| || ||| ||||| | || ||| | || | | Sbjct 3046 ATATAAAAGATGATAAAGA---ACGTTTAAATTTATTTCATGCTATTGAAAATATACCAG 2990 Query 22430 CAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 || |||||||||| ||| |||||| |||||||| || || | |||||| || | Sbjct 2989 CAGTTAAGAATAAAGCACTTTGGGCTGCAAAATGGATAAATGATACAAATTCATTTGCAG 2930 Query 22490 AACGTCTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || | || | ||| ||| |||| ||||||| || | ||| ||| ||||||||| Sbjct 2929 AAAGAATTGTAGCAAATGCATGTG-TTGAAGGTATACTATTTAGTGGTAGTTTTTGTGCA 2871 Query 22549 ATCTTTTGGCTaaaaaaaC-GTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 || |||||| | ||||||| | || | | | || || || ||| ||||| |||| Sbjct 2870 ATTTTTTGGTTTAAAAAACAGAATAAAT-TACATGGACTTACTTTTAGTAATGAACTAAT 2812 Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCAT 22667 ||| ||||||| || | ||||| |||||| ||| | ||||| | | || | Sbjct 2811 TAGTAGAGATGAAGGATTACATACAGATTTTAATTGTTTAATATATAG--TTTAT-TAGA 2755 Query 22668 TCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACG 22727 ||||| | ||| | ||| ||| ||||| ||| | | || |||||| ||||| | Sbjct 2754 AAATAAATTACCAGAAGAAGTTGTTAAAAATATTGTTAAAGAAGCTGTTGAAGTTGAAAG 2695 Query 22728 -TCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTATCAATGCCGAATCAATG 22785 ||| || || || || | |||| || | | | ||||| || ||| | || |||| Sbjct 2694 ATCT-TTCATATGTGAATCTCTACCTTGTGA-TTTAATTGGGATGAATTCAAGATTAATG 2637 Query 22786 AGTACATATATTAAATTTGTTGCAGATCGTCTATT--AATTTCACTCGGTTATGCAAAGC 22843 | ||||| ||||||| |||||||| |||| ||| | | |||| | |||| Sbjct 2636 TCTCAGTATATAGAATTTGTAGCAGATCGATTATTGGAATGT--TTAGGTTGTTCAAAAA 2579 Query 22844 ATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCA 22903 || | | | ||||| ||| | |||||||| | ||||| || ||||||| || | Sbjct 2578 TTTTTTATGCAAAAAATCCTTTTAATTGGATGGATTTAATTTCTCTACAAGGAAAAACAA 2519 Query 22904 ATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATG 22954 | || || |||||| | |||| ||| || || ||| | |||||||||| || Sbjct 2518 ACTTTTTTGAAAAACGTGTTGCTGATTATCAGAAATCTGGTGTTATGGCTG 2468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303316410841514