Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq546 114 1e-20 >seq546 Length=57643 Score = 114 bits (126), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || ||| |||| || || | Sbjct 55992 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 55933 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || || ||| || || ||||| ||||| |||||||| Sbjct 55932 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 55873 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || ||| | || | | || |||||| | ||||||| |||| | | | | ||||||| Sbjct 55872 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAA-CATTATCAGATTATA 55814 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 |||| || ||||||||||| | || ||||| ||| |||| |||||||| | |||| Sbjct 55813 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAAT 55757 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || || |||| || || | Sbjct 56454 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 56395 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || || ||| || || ||||| ||||| |||||||| Sbjct 56394 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 56335 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || ||| | || | | || |||||| | || |||| |||| | | | | ||||||| Sbjct 56334 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAA-CATTATCAGATTATA 56276 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || ||||||||||| | |||||||| ||| |||| ||||||||| Sbjct 56275 ACATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 56226 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || ||| |||| || || | Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || || ||| || || ||||| || || || ||||| Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 56104 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || ||| | || | | || |||||| | ||||||| |||| | | | | ||||||| Sbjct 56103 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAA-CATTATCAGATTATA 56045 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || ||||||||||| | || ||||| ||| |||| ||||||||| Sbjct 56044 ACATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 55995 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 |||||| |||| ||| | || || ||| | || ||||| ||| | || || || Sbjct 56657 GGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAAA 56598 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || || ||||| ||||| |||||||| || ||| | || | | || |||||| Sbjct 56597 ATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCAA 56538 Query 24138 CTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTA 24197 | ||||||| |||| | ||||||||||| ||||| |||||||| | |||||| Sbjct 56537 TTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTTACATTTA 56478 Query 24198 GTGTTAAGATTGAGAGGAGGA 24218 || ||| |||| ||||||||| Sbjct 56477 GTCTTACGATTAAGAGGAGGA 56457 Score = 104 bits (114), Expect = 2e-17 Identities = 187/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 |||| |||||| ||||||||||| || | || | ||||| ||||| || | | Sbjct 5363 TTTCATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTG 5422 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 ||||||| |||| ||| |||| | | | || |||||||| ||||| ||| || Sbjct 5423 GACACATTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCC 5482 Query 133128 ACATGGCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAG 133186 | | ||| |||||||||| | ||| | | || ||||| || |||| | |||| Sbjct 5483 AAACAGCATAAAATAAATCTCTAGCTCGTAAT-TCTTCTTTACCATGATTTTTTCTCAAA 5541 Query 133187 TCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTC 133246 || | ||| ||| || |||| |||||| || || |||||||| || || | ||||| Sbjct 5542 TCTAGAAACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTT 5601 Query 133247 CTTTTACCT---CCCTGATCCACATGTCTA 133273 ||||| ||| || ||||| |||| |||| Sbjct 5602 CTTTTTCCTCCACCTTGATCTACATATCTA 5631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429924330865185