Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq546 100 2e-16 seq380 89.7 4e-13 >seq546 Length=57643 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| | || ||||| ||||| ||| |||| || || Sbjct 55992 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 55933 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | ||||| |||||| ||||| ||||| | || ||||| Sbjct 55932 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 55873 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || || ||||| ||||||| | ||| | | |||||||| Sbjct 55872 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 55813 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || ||||| |||||| |||| | || || |||| ||||||| Sbjct 55812 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| | || ||||| ||||| ||| |||| || || Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || || |||||| ||||| ||||| | || ||||| Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 56104 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || || ||||| ||||||| | ||| | | |||||||| Sbjct 56103 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 56044 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||| || ||||| |||||| |||| | || || |||| |||||||| Sbjct 56043 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 55995 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| | || ||||| ||||| || |||| || || Sbjct 56454 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 56395 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | ||||| |||||| ||||| ||||| | || ||||| Sbjct 56394 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 56335 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || || ||||| || |||| | ||| | | |||||||| Sbjct 56334 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 56275 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||| || ||||| |||||| ||||| | || || |||| |||||||| Sbjct 56274 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 56226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 115370 AAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAA 115429 |||||| ||||| ||||| | || |||||||||||| | || | ||| || || Sbjct 56600 AAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAG 56541 Query 115430 CAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACAT 115489 ||||| ||||||| | ||| | ||||||||||| ||||| || |||||| ||||| Sbjct 56540 CAATTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTTACAT 56481 Query 115490 ATGGTGTTGAGATTGCGAGGAGGA 115513 | || || |||| |||||||| Sbjct 56480 TTAGTCTTACGATTAAGAGGAGGA 56457 >seq380 Length=37146 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 |||||||||||| ||||| ||||| | | ||||||||| ||| || | || || || Sbjct 27200 AAAAATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATC 27259 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || ||| ||| | | | ||| ||||||| ||||| |||| | ||| | || Sbjct 27260 AGTAGATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGA 27319 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 | |||||| | |||| ||| || |||||||||||| || ||||| | ||||| Sbjct 27320 CGAACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTA 27379 Query 115462 TAACATTCAAAAAGAGTCTACT 115483 ||| || || ||||| || ||| Sbjct 27380 TAATATCCAGAAAGAATCCACT 27401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425332455499240