Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq546 356 3e-93 seq598 221 2e-52 seq1515 170 2e-37 >seq546 Length=57643 Score = 356 bits (394), Expect = 3e-93 Identities = 996/1520 (66%), Gaps = 41/1520 (3%) Strand=Plus/Plus Query 62169 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62228 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 62229 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62288 |||| || || |||||||| | ||| ||||| ||||| || || || | ||| ||||||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 62289 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62348 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 62349 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 62399 | ||| |||||||||| ||| | || | || Sbjct 4724 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4777 Query 62400 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62458 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4778 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4836 Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4837 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4896 Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578 | |||| ||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4897 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4956 Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4957 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 5016 Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 ||||||||||| | ||||||||||| | | |||||| ||| | ||| | || Sbjct 5017 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 5076 Query 62699 TTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAACA 62752 | | ||| ||||| ||| | | ||| |||||| | || |||| | Sbjct 5077 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 5136 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 5137 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 5196 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 5197 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 5256 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 ||||| | || |||| ||| ||||| || ||| || || ||| || ||| | Sbjct 5257 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 5316 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATACAAT 62989 || | || || || || ||| | || |||||| ||| ||| | ||| ||| Sbjct 5317 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 5373 Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGT----CCAGGACATTCATCCGGACACAT 63045 ||| || || || ||||| | | || | || |||||||||| |||||||| Sbjct 5374 TTTTCAAATTCTTCACCCCA----TGTTTCACTTAAACCTGGACATTCATTTGGACACAT 5429 Query 63046 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63105 || | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| Sbjct 5430 TAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGC 5489 Query 63106 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 ||||| |||||| | || ||| || || || ||| ||| | | ||| || || Sbjct 5490 ATAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAA 5549 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | ||||| |||||||| ||||| | |||| || | ||| | ||| Sbjct 5550 CTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCC 5609 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATAC 63284 ||| || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| | Sbjct 5610 TCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-C 5668 Query 63285 CATTGGATGTACCATTGGTCCCTGAGATATA-GCTTCCACTGGCACGAATATTACTAATT 63343 | || ||| ||||||| || ||| ||||| | | | |||| |||| | | Sbjct 5669 CGTTTGATATACCATTTGTTCCTCTTATATATGAATTTTGTC-CACGTATATCTTGTACT 5727 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403 | || ||| || || ||||| ||||| || || || ||| | ||||| || ||| | Sbjct 5728 GCTACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAA 5787 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 || || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5788 ATTCCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTT 5847 Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523 || || | ||||||||| || || | || || ||||| |||||| || | ||| Sbjct 5848 GGTGTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGA 5907 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63583 | || || || | ||| |||| ||| | ||| || || | || || | |||| Sbjct 5908 TGATATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATT 5967 Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643 | || || || |||||||| | || || || || || ||| || || || |||| Sbjct 5968 ATCAAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCT 6027 Query 63644 AAAGTTTTAAAACCAAAATA 63663 || ||||||||||||||||| Sbjct 6028 AACGTTTTAAAACCAAAATA 6047 >seq598 Length=26426 Score = 221 bits (244), Expect = 2e-52 Identities = 604/909 (66%), Gaps = 26/909 (3%) Strand=Plus/Plus Query 32351 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 32410 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2466 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2525 Query 32411 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttttt 32470 |||| || || || ||||| ||| || ||||| | ||| | |||||||| Sbjct 2526 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2585 Query 32471 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 32527 | | || || ||| ||| |||| |||||| |||||||||||||| ||| | Sbjct 2586 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2642 Query 32528 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 32584 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2643 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2699 Query 32585 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AA 32641 || || || ||| | | |||| | | || |||||| | || || Sbjct 2700 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2759 Query 32642 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 32701 |||| || | || ||||| ||||| |||| || || ||||||||||||| Sbjct 2760 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2816 Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAC 32759 ||| || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2817 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTG-C 2873 Query 32760 GCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 |||| | ||| ||| | || ||||| || ||| || | || ||| ||| | Sbjct 2874 ACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGC 2933 Query 32819 ATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2934 AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGG 2993 Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 || | || ||||||| ||| | || ||| ||| |||||| | ||| |||| Sbjct 2994 TATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATC 3053 Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 ||| | | ||| ||| |||| ||||| |||||||| | || ||||||||| ||| || Sbjct 3054 AATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAA 3113 Query 32999 GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCA 33057 | |||| || ||||| || |||||| | |||| | | || || |||||||| | Sbjct 3114 TTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATA 3172 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117 |||| || ||||| ||||||||||| || || |||||||| ||||||| |||||| | | Sbjct 3173 CTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTT 3232 Query 33118 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 ||| ||| | |||| || | ||| | |||| ||| | |||||| ||||||||| Sbjct 3233 CATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAA 3292 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237 ||||||| ||||| |||||||| | || ||| | || | ||| ||||||| | | Sbjct 3293 ATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGATACAATG 3352 Query 33238 CAAATCTAT 33246 |||||||| Sbjct 3353 TAAATCTAT 3361 >seq1515 Length=1449 Score = 170 bits (188), Expect = 2e-37 Identities = 228/312 (73%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||| |||| ||| ||||||| || | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||||||| || || | |||| || | || ||||| ||| | ||||| | | Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATT-TAC 476 Query 33041 T-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | || |||||||| |||||||| ||||| ||||||||||| || || |||||||||| Sbjct 475 TAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTA 416 Query 33100 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCC 33158 |||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| Sbjct 415 TAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCT 357 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 | |||||| | ||||||||||| || || || |||||||| | |||||| | ||| || Sbjct 356 ATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGA 297 Query 33219 TATTGAATTGGA 33230 ||| ||| ||| Sbjct 296 TATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614361269200