Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016-
06-16] 2,227 sequences; 38,010,039 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq546 105 6e-18
>seq546
Length=57643
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| |||||||| || || ||||| || || ||||||| |||| || || || ||
Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || ||| | ||| | |||| ||| || || ||||| |||||||| || |
Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAATTCAA-GATAAGGAAGGAATTCCACCAGATC 56105
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||| ||||||| | || | ||||| |
Sbjct 56104 AGCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATA 56045
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
| || || |||||||| || |||| ||||| || | |||||||||||
Sbjct 56044 ACATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 55995
Score = 102 bits (112), Expect = 7e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| |||||||| || || ||||| || || ||||||| |||| || || || ||
Sbjct 56454 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 56395
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || ||| | ||| | |||| ||| || || ||||| || ||||| || |
Sbjct 56394 GGATACCATTGAGAATGTAAAGGCGAAAATTCAA-GATAAGGAAGGAATACCACCCGATC 56336
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||| || |||| | || | ||||| |
Sbjct 56335 AGCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATA 56276
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
| || || |||||||| || |||||||||| || | |||||||||||
Sbjct 56275 ACATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 56226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433316238801005
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |