Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq598 269 3e-67 seq1515 105 7e-18 >seq598 Length=26426 Score = 269 bits (298), Expect = 3e-67 Identities = 601/888 (68%), Gaps = 27/888 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||| || || || |||| ||||||||| || ||||| ||||||| Sbjct 2472 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2531 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| || ||| || | | | | ||||| || || | | || | |||| | | | Sbjct 2532 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAA-ATTTTTGAACAAC 2590 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | ||||||| ||| |||||||||||||| ||||||||||| || ||| Sbjct 2591 CTAAACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAAT 2650 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||| || | | | |||||||| || | |||| | | || | | |||| | Sbjct 2651 TCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAG 2710 Query 93027 CTTCTTT--CAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTA 93084 ||||||| ||| |||| || | || || | |||| ||| | | | | || | || Sbjct 2711 CTTCTTTAACAATATTTTTAACAA-CTTCT-TCTGGTAATTTATTTTCTAATAAACTATA 2768 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 ||||| || ||| || |||||||| ||||| |||| || | ||||| || || Sbjct 2769 TATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAA 2828 Query 93145 TGTTAAACCTGGTAACAG-TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 || | || |||| | || |||| || | |||||| |||| | |||||||||| Sbjct 2829 AGTAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCAC 2887 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGG 93260 ||| | ||||||||| || |||| ||| ||||| | ||| ||||| ||||| Sbjct 2888 TAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTAT 2947 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 ||| ||||||||| ||||||| ||||| ||||||| |||| ||| Sbjct 2948 CATTT------ATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTT 3001 Query 93321 CGATAGCGTTAAATAGGTAATCT---CGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | ||||| | ||||| ||| | || || | |||| ||| || |||| || | Sbjct 3002 CAATAGCATGAAATA---AATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAA 3058 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 | | ||| |||| ||||| | || || | ||| ||||| ||| ||| || | Sbjct 3059 GTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTT 3118 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATA 93496 ||||||| || || || |||||| |||| || ||| | | |||||| |||||| Sbjct 3119 TAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATA 3177 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| ||||||||||| || || | ||| || ||||||||||| |||| || || Sbjct 3178 CCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTT 3237 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | || || |||| || ||| |||| | ||| | |||||| | |||||||| ||| Sbjct 3238 AATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGAT 3297 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 |||||||||||||| || | |||||| | ||| | ||| ||||||| Sbjct 3298 GCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGA 3345 >seq1515 Length=1449 Score = 105 bits (116), Expect = 7e-18 Identities = 203/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 93369 TATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGT 93428 |||| ||||| | | ||| ||||||| || | ||| || | || ||||| || | Sbjct 580 TATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAAT 521 Query 93429 AGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCA 93487 | || | ||||||| | || || || ||| ||||| | ||| | | |||||| Sbjct 520 AAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTA-CTAGCCAAATTTTCT 462 Query 93488 TTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCA 93547 ||||| ||||| ||||||||||| || || | ||| |||||||||||||| ||| Sbjct 461 AATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCA 402 Query 93548 TCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTC 93607 | | || | || || | || | ||| |||| | ||| | |||||| ||||| Sbjct 401 TTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTC 342 Query 93608 CAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 ||||| || ||||| |||||||| || | || ||||| || ||||| ||| ||| Sbjct 341 CAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845298387480