Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq546 183 6e-41 >seq546 Length=57643 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || ||||||| || || ||||| |||||||||||||| || | ||| || ||| Sbjct 55777 CGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCA 55836 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || ||||| || || ||||| | |||||| || |||||||| || |||||||| Sbjct 55837 TCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTA 55896 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || ||||| || ||| ||||| || | |||||| || || | ||||||| Sbjct 55897 TCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATG 55956 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || | ||| || || |||||||||||| Sbjct 55957 GTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | | || || || ||||||| || || ||||| || ||||||||||| || Sbjct 55995 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 56054 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| || |||||||| || ||||| || || ||||| | |||||| || || ||||| Sbjct 56055 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGG 56114 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||| |||||||| || ||||| || ||| ||||| || | |||||| || Sbjct 56115 AATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAAC 56174 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||| ||||| || | ||| || || |||||||||||| Sbjct 56175 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | | || || || || |||| || || ||||| |||||||||||||| || Sbjct 56226 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 56285 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| || ||||| || || ||||| || || ||||| | |||||| || |||||||| Sbjct 56286 TAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 56345 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||| |||||||| || ||||| || ||| ||||| || | |||||| || Sbjct 56346 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 56405 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||| ||||| || | ||| || || |||||||||||| Sbjct 56406 ATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 156 bits (172), Expect = 8e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | | || || || || |||| || || || ||||||||||||||||| | Sbjct 56457 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAA 56516 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| || |||||||| || ||||| || || ||||| | |||||| || |||||||| Sbjct 56517 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 56576 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||| |||||||| || ||||| || ||| ||||| || | ||| || || Sbjct 56577 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAAC 56636 Query 68414 TTCCAAGGTGATGGTTTTTCC 68434 ||||||||||| |||||||| Sbjct 56637 ATCCAAGGTGATCGTTTTTCC 56657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921596744336440