Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq546 114 3e-20 >seq546 Length=57643 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| ||||| ||||| |||||||| || Sbjct 55800 TTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAA 55859 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 55860 TATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 55919 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||| ||||| ||||| || |||| || || || Sbjct 55920 CTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCAC 55979 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 55980 AAATATCTGCATT 55992 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| || || ||||| |||||||| || Sbjct 56262 TTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAA 56321 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 56322 TATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 56381 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||||||||| ||||| || |||| || || || Sbjct 56382 CTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCAC 56441 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 56442 AAATATCTGCATT 56454 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || ||||| || | | || | ||| ||||| ||||| |||||||| || Sbjct 56031 TTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAA 56090 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 56091 TATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATT 56150 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||| ||||| ||||| || |||| || || || Sbjct 56151 CTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCAC 56210 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 56211 AAATATCTGCATT 56223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179620740404906