Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq546 87.8 2e-12 >seq546 Length=57643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 64226 AATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCG 64284 |||| |||| |||| || | || |||||||| || ||||| ||||||| | || | Sbjct 56005 AATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCT 56063 Query 64285 CGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 | ||||| | ||||| || ||| | || | | ||||| || || ||||||||||| Sbjct 56064 TCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTC 56123 Query 64345 TTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| ||||| ||| ||| ||| | ||||| | || || || | || Sbjct 56124 CTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGT 56183 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | |||||| || ||||| ||||| || || || |||||| Sbjct 56184 GATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 86.0 bits (94), Expect = 6e-12 Identities = 188/275 (68%), Gaps = 15/275 (5%) Strand=Plus/Plus Query 154806 TCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGAC--AAACCGGGAC 154863 ||||||| ||| || | ||||||||| ||| || || || || ||||| |||| Sbjct 5356 TCATATTTTTCATATAATTTTTCAAATTCTTCACCC--CATGTTTCACTTAAACCTGGAC 5413 Query 154864 AGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAAT 154923 | | |||||||| |||| ||| ||| |||| || || | |||||||||||||| Sbjct 5414 ATTCATTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAAT 5473 Query 154924 CCGGCACCCACAAAGCGTACAACAAATCAC--GCGCCT-TTTTGTCTTCAGCGCCCATG- 154979 | || ||||| | ||| || || ||||| | || | | || |||| | ||||| Sbjct 5474 CTGGTACCCAAACAGCATAAAATAAATCTCTAGCTCGTAATTCTTCTTTA----CCATGA 5529 Query 154980 TTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCC 155039 ||| | |||| | ||| ||| |||| || | ||||| || || | |||||| || Sbjct 5530 TTTTTTCTCAAATCTAGAAACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCA 5589 Query 155040 ATCGCGCCTTTGCGTTTTCCT---CCTTGATCCAC 155071 | | ||||| | ||||||| |||||||| || Sbjct 5590 AATGATCCTTTTCTTTTTCCTCCACCTTGATCTAC 5624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499630891137880