Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq546 114 9e-21 seq380 89.7 4e-13 >seq546 Length=57643 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| ||||| || | ||||| ||||| || ||||| ||||| || Sbjct 55765 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC--TG 55822 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||| ||||| || || || |||| || | || || ||| || Sbjct 55823 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 55882 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | ||||||||||| || |||||| |||||| | || || ||||| | || ||| Sbjct 55883 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATC-CGATGATTCA 55941 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||| || ||||||| ||||| ||||| || ||||| Sbjct 55942 ACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 55991 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| ||||| || | ||||| ||||| |||||||| ||||| || Sbjct 55996 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATC--TG 56053 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||| ||||| || || || |||| || | || || || || Sbjct 56054 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTG 56113 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 ||||||||||||| || |||||| || ||| | || || ||||| | || ||| Sbjct 56114 GAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATC-CGATGATTCA 56172 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||| || ||||||| ||||| ||||| || ||||| Sbjct 56173 ACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56222 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| |||||||| | ||||| ||||| || ||||| ||||| || Sbjct 56227 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATC--TG 56284 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | || || ||||| || || || |||| || | || || ||| || Sbjct 56285 ATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 56344 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | ||||||||||| || |||||| |||||| | || || ||||| | || ||| Sbjct 56345 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATC-CGATGATTCA 56403 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || ||||| || ||||||| ||||| ||||| || ||||| Sbjct 56404 ACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56453 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| |||||||| | ||||| || ||||| ||||| ||||| | Sbjct 56458 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATC--TA 56515 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||| ||||| || || || |||| || | || || ||| || Sbjct 56516 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 56575 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | ||||||||||| || |||||| |||||| | || || ||||| | || || Sbjct 56576 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATC-CGATGACTCA 56634 Query 15127 ACGTCTAAGGTAATGGTTTTACCT 15150 || || ||||| || ||||| ||| Sbjct 56635 ACATCCAAGGTGATCGTTTTTCCT 56658 >seq380 Length=37146 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTG 15036 || || || ||||| || || || ||||| | | | || | | |||||||||||| Sbjct 27403 AGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 27344 Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || || | || || | |||| |||| |||||| ||||||| || |||||| | Sbjct 27343 CCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 27284 Query 15097 TTTACAATTTCTATAGTATCGCTATT--TTCTACGTCTAAGGTAATGGTTTTACCTGTCA 15154 || | | |||| |||||||| || | ||| || || | || ||| ||||| || | | Sbjct 27283 TTAATATTTTCAATAGTATC--TACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTA 27226 Query 15155 GAGTTTTTACAAAAATTTGCATATTTG 15181 ||||||||||| |||||||| |||| Sbjct 27225 ATGTTTTTACAAATATTTGCATTTTTG 27199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357382299822695