Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq546 104 2e-17 seq380 102 7e-17 >seq546 Length=57643 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || ||||| || ||||| |||||||| | ||| | ||| Sbjct 56242 AAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCC 56301 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||||||| |||||||| |||| |||| |||||| || || || || ||||| |||||| Sbjct 56302 TCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCT 56361 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||||||| || | || | ||| || || || || || ||||| || | || Sbjct 56362 TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTC 56421 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| ||||| || ||||| Sbjct 56422 TTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56453 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || |||||||||||||| |||||||| | ||| | ||| Sbjct 56473 AAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAATAATGTTCTTCCATCT 56532 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||||||| |||||||| |||| |||| |||||| || || || || ||||| |||||| Sbjct 56533 TCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCT 56592 Query 45249 TGAATTTT 45256 |||||||| Sbjct 56593 TGAATTTT 56600 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| || ||||| |||||||| | ||| | ||| |||||||| |||||| Sbjct 55795 GTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCT 55854 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| |||| |||||| || || || || ||||| |||||||||||||| || Sbjct 55855 GCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTT 55914 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | ||| || || || || || ||||| || | || || || || | ||| Sbjct 55915 ACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTT 55974 Query 45324 TTTACAAAAATTTGCAT 45340 || ||||| || ||||| Sbjct 55975 TTCACAAATATCTGCAT 55991 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| || || || |||||||| | ||| | ||| |||||||| |||||| Sbjct 56026 GTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCT 56085 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| |||| |||||| || || ||||| ||||| |||||||||||||| || Sbjct 56086 GCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTA 56145 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | ||| || || || || || ||||| || | || || || || | ||| Sbjct 56146 ACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTT 56205 Query 45324 TTTACAAAAATTTGCAT 45340 || ||||| || ||||| Sbjct 56206 TTCACAAATATCTGCAT 56222 >seq380 Length=37146 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 45140 CAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTT 45199 ||| || ||||| || |||||||||||||| | | ||||| | || |||||||| Sbjct 27404 CAGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTT 27345 Query 45200 TCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 45259 |||||| | || |||| ||| | ||| | ||||| |||| ||||| ||||||||| Sbjct 27344 TCCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGC 27285 Query 45260 TTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||| || ||| | || || || || || || || | || ||||| || ||| Sbjct 27284 TTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAA 27225 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 ||||||||||| |||||||| Sbjct 27224 TGTTTTTACAAATATTTGCAT 27204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990617360920