Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq546 86.0 1e-11 >seq546 Length=57643 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||| | ||| || || || |||| ||| || || | || || ||||||||||| Sbjct 55782 GACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTC 55841 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || |||||||| || || || | | ||||| || || |||||||| || || Sbjct 55842 CAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTG 55901 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| || ||| || || | ||| || | || ||| ||||| | ||||| ||||| Sbjct 55902 AATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTT 55961 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | ||||||||||| || || Sbjct 55962 TCCTGTCAAGGTTTTCACAAATATCTG 55988 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||| | ||| || || || || | ||| || || | || || ||||||||||| Sbjct 56013 GACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTC 56072 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || |||||||| || || || | | ||||| || || ||||||||| || || Sbjct 56073 CAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTG 56132 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| || ||| || || | ||| || | || ||| ||||| | ||||| ||||| Sbjct 56133 AATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTT 56192 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | ||||||||||| || || Sbjct 56193 TCCTGTCAAGGTTTTCACAAATATCTG 56219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178887961314209