Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq546 145 2e-29 >seq546 Length=57643 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| |||||| Sbjct 56011 AAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCT 56070 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||| ||||| || || | || ||| || ||||| ||||| ||||| || ||| Sbjct 56071 TCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCT 56130 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || ||||||||||| ||||| ||| || || ||||| | ||| Sbjct 56131 TGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTC 56190 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| ||||| || || | |||||| Sbjct 56191 TTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| |||||| Sbjct 55780 AAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCT 55839 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||| ||||| || || | || ||| || || || || || ||||| || ||| Sbjct 55840 TCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCT 55899 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || ||||||||||| ||||| ||| || || ||||| | ||| Sbjct 55900 TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTC 55959 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| ||||| || || | |||||| Sbjct 55960 TTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| || || || ||||| | | ||||| ||||| || | ||||| || Sbjct 56256 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTGCTTTCC 56315 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||| || || | || ||| || || || || || ||||| || ||||||||||| ||| Sbjct 56316 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 56375 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||||||||| ||||| ||| || || || || | |||||||||||||| || Sbjct 56376 TACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTCTTTCCTGTCAAGGT 56435 Query 195123 TTTTACGAACACTTGCATT 195141 ||| || || | |||||| Sbjct 56436 TTTCACAAATATCTGCATT 56454 Score = 100 bits (110), Expect = 6e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || || ||||| || || ||||| | ||||| |||||||| | ||||| || Sbjct 56487 AGTAGATTCCTTTTGGATGTTATAATCTAATAATGTTCTTCCATCTTCCAATTGCTTTCC 56546 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||| || || | || ||| || || || || || ||||| || ||||||||||| ||| Sbjct 56547 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 56606 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || ||||||||||| ||||| || || || | ||| | ||| |||||| | ||| Sbjct 56607 TACATTCTCAATGGTATCCGATGACTCAACATCCAAGGTGATCGTTTTTCCTTTAAAA 56664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109449942676109