Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq84 96.9 5e-15 seq1418 93.3 6e-14 >seq84 Length=27429 Score = 96.9 bits (106), Expect = 5e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 126920 TACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAA 126979 || |||||||| | ||||| ||||| ||||| ||||| || || ||||| | | || Sbjct 3536 TAATGGAAGAATGTTAAAGTCCAAAATATTTATTGGTCCTACTTATTATCAGAGATTAAA 3595 Query 126980 ACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATC 127038 ||||||||| ||||||| || |||||||||||| || | |||| | ||||| Sbjct 3596 ACATATGGTAGAAGATAAGATACATGCTAGAAGTAGAGGACCTTTAACTATGATTAC-GA 3654 Query 127039 GTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAG 127098 | ||||||| ||| | || | || ||| || | ||||||| |||||||||| || Sbjct 3655 GACAACCAACAGAAGGTAGATCACGAGATGGAGGTCTCCGATTTGGTGAAATGGAAAGAG 3714 Query 127099 ATTGTAT 127105 | ||||| Sbjct 3715 ACTGTAT 3721 >seq1418 Length=1421 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/172 (73%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 126099 TTAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAAT-TTAATGGTCT 126154 ||| ||||||| ||||| ||| | || ||||| | || |||||| || | | | Sbjct 1117 TTATATTATCCACAAAAGCCATTAGTATGTACAAAAGCTA---CAGAATATTTACACTTT 1173 Query 126155 AAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAA 126214 ||| || | || ||| || ||||||||||||||||| ||||||||| |||||||| Sbjct 1174 AAA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGTTACACAGGATACAA 1232 Query 126215 TCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 |||||||||||| | || | ||| || ||||||| || | ||| ||||| Sbjct 1233 CCAAGAAGATAGTTTAATCATGAATCAATCATCTATTGATCGGGGTCTATTT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658384871700920