Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq546 569 2e-157 seq598 302 5e-77 seq1515 215 6e-51 >seq546 Length=57643 Score = 569 bits (630), Expect = 2e-157 Identities = 1030/1507 (68%), Gaps = 35/1507 (2%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||||||||| |||| ||||||||| |||||||| | || ||||| || || Sbjct 4554 ATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAATATTGCTAGT 4613 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 || ||||| | ||||||||| ||||| || || || | ||| ||||| |||||||| | Sbjct 4614 GTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAGTAGGCATAGG 4673 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 ||| | | ||| |||||||| ||||| ||||| ||| | |||| Sbjct 4674 TGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAAGTTCAGTCCA 4733 Query 47492 ATCCCAA-AGATCTGATGGAACA--ACATTCCAAAAATCATATTGAAGAATTCCTTTACT 47548 || |||| | | | || | | | |||||| | |||| |||||||||| |||| || Sbjct 4734 ATTCCAATATTTATTATCAACCTTTATATTCCACATATCAAATTGAAGAATACCTTGGCT 4793 Query 47549 TATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC-ACA-ACTT 47606 ||| ||| | ||| | || ||| || || | || ||| | ||| | | || | Sbjct 4794 AGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTAATTCCATAGACAT 4853 Query 47607 GCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTT-GCTTC 47665 ||| |||||| |||||| || |||||||| ||| || | |||| |||| || ||||| Sbjct 4854 --TTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTA-ATTCTTTTGCTTC 4910 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 |||||| ||||||| |||||||| || |||||||| |||||||| Sbjct 4911 ATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTTGTACACCAAT 4970 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTAT 47785 || ||||||||||| || | || || ||||||||| | ||||| | ||| | Sbjct 4971 TCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGATAATAATTTCT 5030 Query 47786 ATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAA 47845 ||||||||||| | || | |||||| |||||| ||||| Sbjct 5031 TTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATAATTTTTTAAA 5090 Query 47846 ATCAAACTTGTTATTTA---TA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACA 47899 || |||| | || ||| || ||||| || | || |||||||||| ||||| Sbjct 5091 ATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATGCTAAGTTACA 5150 Query 47900 TACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTT 47959 ||||| || |||| ||| ||||||| ||||||||| ||||||||||| |||||| Sbjct 5151 AACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACATAGATTACTACATTT 5210 Query 47960 GATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAA 48019 || || || ||||||| |||||| ||||||| || || || | |||| | Sbjct 5211 AATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTATACAACATATA 5270 Query 48020 AGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT 48079 ||| || |||||||| ||| || | |||| ||| | | || || | || Sbjct 5271 TGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT--CTTGCGCTAAT 5328 Query 48080 AACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 | ||| | | || ||| || | ||| ||||| |||||| || |||||||| || Sbjct 5329 A-CAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAATTTTTCAAATTCTTC 5387 Query 48137 CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || | | | ||| || ||||||||||| |||||||| |||| ||||| | || Sbjct 5388 ACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTTATT 5447 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | ||| ||||| ||||||| | |||||||| ||||| ||| ||||||||| |||| Sbjct 5448 TTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAATAAATCTCTAGC 5507 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 || || |||||| || ||| ||| || | | || ||||| || | |||||| | ||| Sbjct 5508 TCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAATATATCTGAATG 5567 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | ||||| ||| | | ||| || ||| || |||||||||| ||| Sbjct 5568 CCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATA 5627 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 ||| || |||| |||| |||||||||||||||| || | || |||||||||||||| || Sbjct 5628 TCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCGTTTGATATACCATTTGT 5687 Query 48437 TC--CCGAAATATAACT----TCCAC-TAGCTCTTATATTACTAATTGAAATACCTATAC 48489 || | | |||| | | ||||| || |||| || | || | ||| |||| Sbjct 5688 TCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACTGCT-------ACACCAATAC 5740 Query 48490 CACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATAC 48549 ||||||| ||||| ||| | |||||| | || | || ||| |||||||||| || Sbjct 5741 CACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTTCAATCG 5800 Query 48550 TATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAAT 48609 ||| || ||||| || || |||||| ||||| || || || ||||||| Sbjct 5801 AATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCCCTGAAT 5860 Query 48610 TAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAA 48669 ||||||||||||| | |||||| |||| |||| | ||| | || | ||||||||| | Sbjct 5861 TAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATGTTTCTA 5920 Query 48670 TAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAG 48729 | |||| ||| | ||||||||| || ||||| | ||||| || || ||| | Sbjct 5921 ATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAATGTTGTG 5980 Query 48730 GTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAAC 48789 ||||||| | |||||| ||||| || ||| | |||||| |||| || |||||||||| Sbjct 5981 GTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGTTTTAAAAC 6040 Query 48790 CAAAATA 48796 ||||||| Sbjct 6041 CAAAATA 6047 >seq598 Length=26426 Score = 302 bits (334), Expect = 5e-77 Identities = 588/851 (69%), Gaps = 37/851 (4%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||| | ||||||||| || || |||||||| | || || || | Sbjct 2484 TTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAA 2543 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| ||| ||| ||||||||| ||| | | |||||| | ||||| ||| || Sbjct 2544 ATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAA 2603 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCAC-AATTCATTCCT 18843 || | | ||| |||||||||| ||||| || | ||| | ||| ||||||| || Sbjct 2604 TAATCG---ATCTGCTACAAATTCTATATACTGAGA-CATTA-ATCTTGAATTCATCCCA 2658 Query 18844 ATTAATTTAACAGGTAGTG-----CATCTGTAAGAAATTCTTGTTCTATATTTACTGCCT 18898 ||||| | | |||||| | ||| || |||| |||| || | | || || | Sbjct 2659 ATTAAATCACAAGGTAGAGATTCACATATGAAAGA---TCTT--TCAACTTCAACAGCTT 2713 Query 18899 CTGATATAATAGAT---ACAACTCTATCT--TCATTAGGAGGGTATAGAAGATGTTTAAA 18953 || | |||| | |||||| ||| | ||| | | || | | || | Sbjct 2714 CTTTAACAATATTTTTAACAACTTCTTCTGGTAATTT--ATTTTCTAATAAAC---TATA 2768 Query 18954 CATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAA 19013 || ||||| |||||| ||||| ||| || |||||||| || | ||||||| ||| Sbjct 2769 TATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAA 2828 Query 19014 TGTTAAACCAGGCATCAGTCCTCttttttttAA-CCAGAATATAGAAGCAAATGATCCAG 19072 || | ||| | | | ||| |||||||| ||| || || | | ||| ||| Sbjct 2829 AGTAAGTCCATGTAATT-TATTCTGTTTTTTAAACCAAAAAATTGCACAAAAACTACCAC 2887 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 ||| | ||||||||| || |||| || || | ||||||| || | | || Sbjct 2888 TAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAAT---GAATTTG 2944 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 ||| || |||||||| |||||| || || || || || ||| || | || | Sbjct 2945 TATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAA 3004 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 ||| || ||||| || | ||| || | |||||| | ||| ||| || | ||||| Sbjct 3005 TAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAAC 3064 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 ||||| |||||||||| || ||||||| || || |||||| |||||| | | |||| Sbjct 3065 TGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTT 3124 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACTATTCCATCA 19371 |||| || || ||||| || |||| ||| | | |||||||||| ||||| |||||| Sbjct 3125 CTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATCA 3183 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | Sbjct 3184 CTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTT 3243 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | |||| || | ||| | |||||||||| ||||||| |||||||||| || || ||| Sbjct 3244 TCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCT 3303 Query 19492 GCTTTTTTATA 19502 ||||||||||| Sbjct 3304 GCTTTTTTATA 3314 >seq1515 Length=1449 Score = 215 bits (238), Expect = 6e-51 Identities = 238/312 (76%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| ||| ||| || |||||||| || |||| || || |||||||| | ||| Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || ||||| ||||| | | ||||| |||| ||||| || || ||||| || | Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT-TTAC 476 Query 19344 GA-CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 19402 | |||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct 475 TAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTA 416 Query 19403 TAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA-TCATTAATATCTTTAGATAAATCT 19461 ||||||||||||||| | ||||| | ||| || || || | ||| | ||||||||| Sbjct 415 TAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCT 357 Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 | ||||||| | |||||||| || || || ||||||||||| | ||||||| ||| || Sbjct 356 ATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGA 297 Query 19522 TATTGTATAGGA 19533 ||| |||||| Sbjct 296 TATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093152296280