Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq598 266 4e-66 seq1515 185 1e-41 >seq598 Length=26426 Score = 266 bits (294), Expect = 4e-66 Identities = 572/838 (68%), Gaps = 29/838 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||| ||||| || |||| ||| |||| ||||| ||||| ||||||| Sbjct 2472 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2531 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGT---ACTACA 36988 ||| || || ||||| ||| ||| ||||| || || | | || | || || Sbjct 2532 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACC 2591 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | ||||| | || | ||| || ||||||||||| || | | |||||| | | Sbjct 2592 TAAACATTCCA--ATAATCG-ATCTGCTACAAATTCTATATACTGAGACATTAATCTTGA 2648 Query 37049 GTTTATACCAATTAGTTTTAC----TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTA 37104 || || ||||||| | || | || | || | | |||| | | |||| | | Sbjct 2649 ATTCATCCCAATTAAATC-ACAAGGTAGAGATTCACAT--ATGAAAGA-TCTTTCAACTT 2704 Query 37105 TTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATT 37164 ||||| |||||||| ||||| || ||||||||| | | || || ||| | Sbjct 2705 CAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC 2764 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 || | | |||||| |||||| |||||| |||||||||||||| || | ||||||| Sbjct 2765 TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTAC 2824 Query 37225 AAAAGGTTAATCC-TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||| || | ||| || ||| | || |||||| || |||||| ||||| |||| Sbjct 2825 TAAAAGTAAGTCCATGTAATTTATTCTGTTTTTTAAA-CCAAAAAATTGCACAAAAACTA 2883 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||| ||| | ||||||||||| |||| |||||||| | | | || |||| Sbjct 2884 CCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA---TGAA 2940 Query 37344 CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT-TTAACACATTCAATTGT 37402 | |||| ||||||||| | |||| ||| |||| | ||||| | || | Sbjct 2941 TTTGTATCATTTATCCATTTTGCAGCCCAAAGTGC-TTTATTCTTAACTGCTGGTATATT 2999 Query 37403 TTCAATTGCTTTTAAGAGAAAGttttt--ttCTTCACTATCTGTTATATAAGTATCAATT 37460 |||||| || | || | || || ||||| | |||| |||||||| ||||||| Sbjct 3000 TTCAATAGCATGAAATA--AATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATA 3057 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 |||||||| ||| |||| || || || ||||| | ||||| ||||| ||||| Sbjct 3058 AGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTT 3117 Query 37521 CTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 ||||||| | | |||||| || | |||||| | |||| || ||||| ||||| Sbjct 3118 TTAGCTTCTGTAATTTGAACTTCTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATA 3177 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGA- 37639 ||||||||||||||||| || || | ||||| ||| ||||||||| |||||| ||| | Sbjct 3178 CCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCAT--TTTCAT 3235 Query 37640 -TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||||||| |||| || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 3236 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 3293 >seq1515 Length=1449 Score = 185 bits (204), Expect = 1e-41 Identities = 194/254 (76%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 |||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| Sbjct 587 ATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGA 528 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 ||| |||||| |||||||| || ||| || || | ||||| | |||| || Sbjct 527 AAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAA 468 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 ||||| ||||| ||||||||||||||||| || || | |||| ||||||||||||| Sbjct 467 TTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGT 408 Query 37626 CTTTCAT---CATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 37682 |||||| |||| |||||||| | || || | ||| |||||||||| | ||| Sbjct 407 TTTTCATTTACATT---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCT 351 Query 37683 TCAACGGTCCAAAA 37696 ||| | |||||||| Sbjct 350 TCAGCAGTCCAAAA 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592300311381080