Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq546 109 5e-19 seq380 102 7e-17 >seq546 Length=57643 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| ||||| || || || || ||||| ||| ||| ||| | || Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| || || || ||| | || |||||| Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 56104 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || ||| | || ||||| || || |||||||||||| | ||| | | |||||||| Sbjct 56103 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 56044 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || |||||||||||| | ||| | || ||| ||||| ||||||| Sbjct 56043 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55996 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| ||||| || || || || ||||| ||| ||| ||| | || Sbjct 55992 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 55933 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| || || || ||| | || ||||| Sbjct 55932 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 55873 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || ||| | || ||||| || || |||||||||||| | ||| | | |||||||| Sbjct 55872 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 55813 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || |||||||||||| | ||| | || ||| ||||| ||||||| Sbjct 55812 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55765 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| ||||| || || || || ||||| || ||| ||| | || Sbjct 56454 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 56395 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| || || || ||| | || ||||| Sbjct 56394 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 56335 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || ||| | || ||||| || || |||||||| ||| | ||| | | |||||||| Sbjct 56334 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 56275 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || |||||||||||| | || | || ||| ||||| ||||||| Sbjct 56274 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 56227 >seq380 Length=37146 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||||||||||||||||||||||| ||| ||||| ||| || || ||| | Sbjct 27200 AAAAATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATC 27259 Query 28610 TTCAGAGACGGTGGCCGAT-CTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 ||| || | | || | ||||||||| || || || || | | | ||| | | Sbjct 27260 AGTAGATACTATTGAAAATATTAAAGCAAAAATTC-AGGATAAGGAAGTAATTCCCCTCG 27318 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 | |||| ||| | || ||||| || |||||||| ||| | |||||| | |||| Sbjct 27319 ACGAACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATT 27378 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 |||| || || |||||||| |||||| || ||||| Sbjct 27379 ATAATATCCAGAAAGAATCCACTCTGAACTTGGTA 27413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425393253849033