Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq546 347 6e-91 >seq546 Length=57643 Score = 347 bits (384), Expect = 6e-91 Identities = 1023/1546 (66%), Gaps = 82/1546 (5%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGA-AGTGAATGGTTCAAAACATTC 25074 ||||||||| | |||||||| || | || ||| |||| | ||||||||| |||| Sbjct 4573 AATTCTCCACTGAGTACTCTTCT-ATAGTAAATATTGCTAGTGTACGGTTCAAAAGATTC 4631 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 ||| |||||||| || || ||||||||||| || ||||| ||||| | || ||||| Sbjct 4632 ATTGTTTCCTAATATCTGTGAAGTAGATGCAGTAGGCATAGGTGCTAAAAGTAATGAATT 4691 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAAT---TATTATC 25191 ||| || |||| ||| || | || ||| | || | ||||| ||| ||||||| Sbjct 4692 TCTTAATCCATGTTTTTTTATTTTTTCTTTAAGTTCAGTCCAATTCCAATATTTATTATC 4751 Query 25192 TAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCT-GCAGGCGATT 25250 | || |||| || ||| |||||||| || ||| | | ||| || || Sbjct 4752 AACCTTTATATTC----CACATA--TCAAATTG-AAGAATACCTTGGCTAGCTGGACTAC 4804 Query 25251 GATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAG 25310 ||| ||| | |||||| || | || || | || | || ||||| |||| Sbjct 4805 CTTCATAAGATTCATATTTCCCATAAATTTGAGCTAATTCCATAGACATTTCTAATGCAG 4864 Query 25311 CATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAG 25370 ||||||||||| |||||||||| ||| ||||| || |||| ||| ||| ||| Sbjct 4865 CATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTTCATCTGATTCGTAAG 4924 Query 25371 CAATTTCCATTAAGGCG--AACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGACG 25428 | | | | || || || ||||| |||||||| || || || | ||| | ||| | Sbjct 4925 GATAT--CTTAAAAGCATAAATGTATCAGCTAATCCTTGTACACCAATTCCTATTGGTCT 4982 Query 25429 ATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACATT 25488 |||| | | || | | |||| |||| ||||| ||||| | || || | || Sbjct 4983 ATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGATAATAATTTCTTTCTATAATTTT 5042 Query 25489 ATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGG 25548 |||| ||| | | || ||| ||| |||| | ||| | ||| ||| Sbjct 5043 GTCTAAATTTCTCGTAATAA--TTTTAGTAATTTCATAT---AATTTTTTAAAATTAAAC 5097 Query 25549 CTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAAC 25608 || ||| | ||| | | |||||||||| ||||||| || |||||||| |||||||| Sbjct 5098 ATT----TTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATGCTAAGTTACAAAC 5153 Query 25609 AGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGA 25667 ||| ||| | | || | | |||||| | || || ||||| || ||| |||| | Sbjct 5154 AGCAACTTCAT-CTGGTGATGTATATTCGATTATTTCACAACATAGATTACTACATTTAA 5212 Query 25668 TTACTCCATAATTCTTTTGATTA----TTGCATGTATTGACAATATCTTTATATCCTAAA 25723 || || |||| ||||||||| | |||| ||| ||||||||| | | Sbjct 5213 TTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGA----ATCTTTATACAACATA 5268 Query 25724 TATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTT 25783 ||||| |||||||| |||||| | |||||| ||| | ||| |||| | Sbjct 5269 TATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAATCTTGCGCTAAT 5328 Query 25784 AC---TTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCT 25840 || ||| ||| | || || | || || | |||| || | || |||||||| Sbjct 5329 ACAGTTTTTTTTCCTAAATTTTCTTCTT---CATATTTTTCATATAATTTTTCAAATTCT 5385 Query 25841 TGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGAAT 25900 | | | | ||| ||| || | || | | || ||||||| | | Sbjct 5386 TCACCCCATGTTTCACTTAAA------CC-------TGGACATTCAT--TTGGACACATT 5430 Query 25901 AAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCA 25960 || ||||| ||||| | |||| | | |||||| |||||||| | ||| | ||| Sbjct 5431 AATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCA 5490 Query 25961 TAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA 26020 |||||||||||||| |||| | ||||||||| || ||||| ||| | | ||||| || Sbjct 5491 TAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAAC 5550 Query 26021 TCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCT 26080 ||||| |||||||| ||||||||||| | ||| | ||||| ||||||||||||||| Sbjct 5551 TCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCT 5610 Query 26081 CCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCA 26140 |||||||||||||| ||||| || || || || |||||| | |||||||| |||||||| Sbjct 5611 CCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCG 5670 Query 26141 GTTGAAAATCCGTTTG-TGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATG 26199 |||| | || |||| | || | | || || |||| | | ||||| || | Sbjct 5671 TTTGATATACCATTTGTTCCTCTTATATATGAATTTTGTCCA-CGTATATCTTGTACTGC 5729 Query 26200 AATACCGATTCCACCAGCCCATTTTGAAATAGC--TGCACAAT-CTGAAACTGTATCGAA 26256 | ||| || ||||| | || ||| | || | ||||| | || || ||| || || Sbjct 5730 TACACCAATACCACCTG--CAGTTTTACTTATCAAAGCACATTGCTTTAA-TGTTTCAAA 5786 Query 26257 AATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATG 26316 |||||||| || ||| ||||||| | || ||||||||| || || | || | Sbjct 5787 AATTCCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCT 5846 Query 26317 AGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCA-AAG 26375 | ||| ||||||||||||||||| ||||| ||||| ||| ||||| || || || Sbjct 5847 TGGTGTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAG 5906 Query 26376 CTGTATAAGTTTCAAGAACTTCATC--GATATTGTAATTACTAACTTCAATAGCTGTTCT 26433 || ||| ||||| | ||| || ||| | ||| | || |||| | | ||| Sbjct 5907 ATG-ATATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATAC--CAATTGATACTCT 5963 Query 26434 TAACCACATATATTGAGGTCGTTC---AATTACATTATT-TTCCGCATCTCTAATCAAAT 26489 | || || ||| |||| ||| |||| |||||| | ||| ||| |||| Sbjct 5964 CATTATCAAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGC------AAT-AAAT 6016 Query 26490 AAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535 | || ||||||| ||||| || ||||||||||||| ||| ||||| Sbjct 6017 ATGACCTTTCTAACGTTTTAAAACCAAAATAATCATAATTAAAATC 6062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253033132099025