Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq621 91.5 2e-13 >seq621 Length=54537 Score = 91.5 bits (100), Expect = 2e-13 Identities = 230/338 (68%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 47773 ACAGAATATTGATTTCCTGTG-GCA-ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCA 47830 ||||||| ||| ||| | | ||| || |||| ||| ||||| | ||||| | || Sbjct 33390 ACAGAATGTTG--TTCATTAGAGCATATGACAAGATCTATGGGTTCATTCTGTTGTAACA 33447 Query 47831 TTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGAT 47890 |||| |||| || | ||||||||| | |||||||||||||| | | | ||||| || Sbjct 33448 TTAAGTACATTGCTTGTACATAATCTTTTGCATGTCCCCAGTCCCTATAAGTATCAATAT 33507 Query 47891 TTCCTAGATATA-AACAGTCTTGCTTACCTTCAGAGATTGCTTTTAAT-GCTCTTGTAAT 47948 | || || || |||| || | || || | | || | || ||| || || || || Sbjct 33508 TACCAAGGGTTAGAACACACT-GTGTATGTTTACATAT-GTTTGCAATAGCCCTGGTTAT 33565 Query 47949 CTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACT 48008 || || || ||||||||||| | ||||||| |||||| ||||| | ||||||| | Sbjct 33566 TTTTTTGGTAACGAAAGTTTCACCTCTTCTTGGACTTTCATGGTTAAATAAAATACCATT 33625 Query 48009 ACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTT 48068 | | |||| ||||||||| | ||| || | ||| | | |||| ||||| Sbjct 33626 AACACAAAACATATTGTATGATTCCCTATAATTTATGGTTATGTAATGTGCATATAGTTT 33685 Query 48069 TGCAACACCATAAGGAGA-ACGTGGATAGAAAGGTGTG 48105 |||| |||| ||||| || ||| | ||||| ||| Sbjct 33686 AGCAATTGCATATGGAGATACAGGGA-AAAAAGGAGTG 33722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665475874299640