Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq546 111 2e-19 >seq546 Length=57643 Score = 111 bits (122), Expect = 2e-19 Identities = 589/931 (63%), Gaps = 11/931 (1%) Strand=Plus/Minus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGC 75561 || ||||||||| |||| | || |||| | |||||| | | || ||||||| ||||| Sbjct 5690 GGAACAAATGGTATATCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACGATACAGC 5632 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618 | |||||| |||||| || | | || || || | || || || | ||||| Sbjct 5631 TAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACC 5572 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||||| | ||||| | ||||| || || || || || || ||| | ||||| Sbjct 5571 ATGGCATTCAGATATATTTGAGTTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATT 5512 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 || ||||||| | |||| | | ||| | ||||| | || ||||| | ||| | Sbjct 5511 ACGAGCTAGAGATTTATTTTATGCTGTTTGGGTACCAGATTTGTTTATGAAAAGAGTTAA 5452 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798 || | | ||| | | | |||||| | | |||||| | || | Sbjct 5451 AGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTGAAACATG 5392 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC 75858 |||||| || |||||| | || ||| |||||||| || | || || || Sbjct 5391 GGGTGAAGAATTTGAAAAATTATATGAAAAATATGAAGAAGAAAATTTAGGAAAAAAAAC 5332 Query 75859 TGTACCAGCCGCCGATGTTTGGAAGGCTATTCT-CAAA-TCACAGACGGAGACTGGAACA 75916 |||| ||| ||| | ||| |||||| | |||| ||| | | || || || | Sbjct 5331 TGTATTAGCGCAAGATTTATGGTTTGCTATTTTACAAAGTCAAATA--GAAACAGGTGTA 5274 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 ||||||||| | || || ||| | ||||| || ||| ||||| ||||| || ||| Sbjct 5273 CCATATATGTTGTATAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAGGGACA 5214 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 || || | ||||| || ||||| | || || ||| ||||| ||| Sbjct 5213 ATTAAATGTAGTAATCTATGTTGTGAAATAATCGAATATACATCACCAGATGAAGTTGCT 5154 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 ||||| || || ||||| || || | || | ||| || ||| | | ||| Sbjct 5153 GTTTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGATACAGAAAAAAAAATGTTT 5094 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 ||| | ||||| | ||||||| || || ||| |||| | |||| || || | | || Sbjct 5093 AATTTTAAAAAATTATATGAAATTACTAAAATTATTACGAGAAATTTAGACAAAATTATA 5034 Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGACCTAT 76215 || ||||||| |||||| ||| | || ||||| || || | |||| ||||| || Sbjct 5033 GAAAGAAATTATTATCCTGTTAAAGAAGCT-GAAAGATCAAACAGAAGACATAGACCAAT 4975 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTC 76275 || | ||||| ||||| | || ||| |||||| | | | || | | || || Sbjct 4974 AGGAATTGGTGTACAAGGATTAGCTGATACATTTATGCTTTTAAGATATCCTTACGAATC 4915 Query 76276 AGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGA 76335 ||||||||| || || | ||| | || |||||||| |||||| | || | | || Sbjct 4914 AGATGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTATTATGCTGCATTAGA 4855 Query 76336 GGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGC 76395 | | ||||| ||| || | || ||||| | | ||| ||| ||| || Sbjct 4854 AATGTCTATGGAATTAGCTCAAATTTATGGGAAATATGAATCTTATGAAGGTAGTCCAGC 4795 Query 76396 GTCCCAAGGGGTGCTTCAGTTTGATATGTGG 76426 |||||| | ||||| |||||||||||| Sbjct 4794 TAGCCAAGGTATTCTTCAATTTGATATGTGG 4764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596552992993760