Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq546 159 6e-34 seq380 131 3e-25 >seq546 Length=57643 Score = 159 bits (176), Expect = 6e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 || ||| | ||| ||||| ||||| | || | || || |||| ||||| || || Sbjct 55755 AAATTAAAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTT 55814 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| ||||| ||| || ||||| ||||| ||||| |||||||| || || Sbjct 55815 ATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTG 55874 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || ||||||||||| |||||||| ||||| | |||| ||| ||| ||||| || Sbjct 55875 ATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGA 55934 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || || || ||||| | ||||| |||||||| |||||| Sbjct 55935 TGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| | || | ||| || |||| ||||| || ||||| || ||| Sbjct 56227 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 56286 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || ||||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 56287 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56346 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| |||||||| ||||| | |||| ||| ||| ||||| || || ||||| Sbjct 56347 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 56406 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || ||||| | ||||| |||||||| |||||| Sbjct 56407 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| | || | ||| || |||| || || || ||||| || || Sbjct 56458 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAAT 56517 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || ||||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 56518 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56577 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| |||||||| ||||| | |||| ||| ||| ||||| || |||||||| Sbjct 56578 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 56637 Query 193314 TCTAGAGTTATAGTTTTACCT 193334 || | || || ||||| ||| Sbjct 56638 TCCAAGGTGATCGTTTTTCCT 56658 >seq380 Length=37146 Score = 131 bits (144), Expect = 3e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||||||||||||| |||||||||||||| |||| || | || ||| |||| ||||| Sbjct 27355 TCTAATTGTTTTCCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCC 27296 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | ||| |||||| ||||||||| || ||||| || || | || ||| Sbjct 27295 TGAATTTTTGCTTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTT 27236 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||| ||||||||||||||||||||||| Sbjct 27235 TTTCCCCTTAATGTTTTTACAAATATTTGCATTTT 27201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899629355870640