Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq598 264 2e-65 seq1515 140 5e-28 seq546 136 6e-27 seq380 86.0 9e-12 >seq598 Length=26426 Score = 264 bits (292), Expect = 2e-65 Identities = 564/825 (68%), Gaps = 24/825 (3%) Strand=Plus/Plus Query 17884 TTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATT 17943 ||| || || || ||||| ||||||| | || ||||||| ||| ||| ||| ||||| Sbjct 2505 TTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATT 2564 Query 17944 AGTGGTTTTATAATATTTTTCTTGTAT-TAATTCGTATAATAATCTATCTGCTACAAATT 18002 | | | | || |||||| | ||| | ||||||| |||||||||||||| Sbjct 2565 TTTTGCATAAAAA-ATTTTTGAACAACCTAAACATTCCAATAATCGATCTGCTACAAATT 2623 Query 18003 CGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCA- 18061 | | ||| || ||||| || ||||||| || | || ||||||||| ||| Sbjct 2624 CTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCAC 2683 Query 18062 ATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTT 18120 ||| ||| |||||| | ||||||| ||||| | || ||| | || || Sbjct 2684 ATATGAAAGATCTTTCA--ACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTC 2741 Query 18121 TGGCAATTTATTAATTATGTGATTATA--ATATAATAAACACGCAAAATCAGTGTGTAAA 18178 ||| |||||||| || | | || | ||||| |||||| |||||| || ||||| Sbjct 2742 TGGTAATTTATT--TTCT---AATAAACTATATATTAAACAATTAAAATCTGTATGTAAT 2796 Query 18179 CCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttt 18238 ||||||||||| |||| ||| |||||||| || | || | | | || ||| ||| Sbjct 2797 CCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTAT-TCTGTTT 2855 Query 18239 tttAG-CCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAA 18297 |||| |||||| || | ||||||| | ||| | |||||| ||||| || || Sbjct 2856 TTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATT 2915 Query 18298 CGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCCATT 18356 |||| | |||||| ||||| || |||| | ||| | ||||||||| ||||| Sbjct 2916 TGCTACAATTCTTTCTGCAAA--TGAATTTGTA--TCATTTATCCATTTTGCAGCCCAAA 2971 Query 18357 CTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTT 18416 | ||| | |||||| | || ||||||| ||| |||| ||||| Sbjct 2972 GTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTT 3031 Query 18417 TGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCA 18476 | ||||||||||||| | || || | ||| ||| |||| ||||||||| |||| | Sbjct 3032 TATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTA 3091 Query 18477 TAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATC 18536 ||||| ||||| ||||| | |||| || | | ||||| || || ||||| | Sbjct 3092 CTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAAC 3150 Query 18537 TTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATAT 18595 || ||| ||||||| || |||||||| ||| || ||| |||||||| ||||||| | Sbjct 3151 TTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGT 3210 Query 18596 TTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCATCTATATCTTTTGATAG 18654 ||||| |||||||||||||| || || | ||| ||| | || | || ||| |||||| Sbjct 3211 TTAATAAAATGTTTTTCATTTTCATTTA-ATTTTTCAAAATCTTTTAAATCACTTGATAA 3269 Query 18655 ATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 ||| | |||||| | ||||||||| |||| ||| || | ||| || Sbjct 3270 ATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 3314 >seq1515 Length=1449 Score = 140 bits (154), Expect = 5e-28 Identities = 232/329 (71%), Gaps = 12/329 (4%) Strand=Plus/Minus Query 18377 GGTATACTCTCTATAGCATTAAACAAAT----CATCTTTTTCTTTGGAATCTTTTATATA 18432 |||||| | || ||||||| ||| |||| | ||| |||| ||| || ||||| Sbjct 638 GGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTC----ATCCTTAATATA 583 Query 18433 AGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACT 18492 | | || ||||| ||| ||| ||||||| ||||| |||| | |||||| |||||| Sbjct 582 ATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGA 523 Query 18493 ATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTA-CCAAATTCT 18551 ||||||| | |||| || ||| | ||| || ||||| || ||| ||||||| | Sbjct 522 ATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTT 464 Query 18552 CATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTT 18611 | ||||| || ||| || ||| |||||||| || |||| ||| || |||||||||| Sbjct 463 CTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTT 404 Query 18612 CATTATCCTTGAGATTGTTC-CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGAT 18670 |||| | || | ||| ||| | || | | ||| |||||| ||| | |||||| | Sbjct 403 CATTTACATTTA-ATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCA 345 Query 18671 GTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 |||||||| || | ||| || | ||| || Sbjct 344 GTCCAAAATGAGGCTTCAGCTTTTTTATA 316 >seq546 Length=57643 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||||| |||||||| ||||| || || ||||| || Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 56104 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||| || | ||| || ||||| | |||||| ||||| |||||||||||||| Sbjct 56103 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 56044 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| ||||| | || | || ||||| ||| |||||||||| || Sbjct 56043 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55996 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 55992 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 55933 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||||| |||||||| ||||| ||||| || || || Sbjct 55932 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 55873 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||| || | ||| || ||||| | |||||| ||||| |||||||||||||| Sbjct 55872 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 55813 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATT 156058 || ||||| | || | || ||||| ||| |||||||||| ||| | |||| Sbjct 55812 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAATT 55756 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 56454 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 56395 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||||| |||||||| ||||| ||||| || || || Sbjct 56394 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 56335 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||| || | ||| || ||||| | || ||| ||||| |||||||||||||| Sbjct 56334 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 56275 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || | |||||||| ||| |||||||||| || Sbjct 56274 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 56227 >seq380 Length=37146 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||||||| | |||||||| | |||||||| ||| | | || || ||| Sbjct 27201 AAAATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCA 27260 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||| |||| ||| | ||| ||||| || ||||| |||| || || | || Sbjct 27261 GTAGATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGAC 27320 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||| |||| ||| || || || | ||| | | ||||||| |||||| Sbjct 27321 GAACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTAT 27380 Query 156000 AATAT 156004 ||||| Sbjct 27381 AATAT 27385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731851626513200