Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq598 347 2e-90 seq546 196 9e-45 seq1515 147 4e-30 seq380 116 7e-21 >seq598 Length=26426 Score = 347 bits (384), Expect = 2e-90 Identities = 563/803 (70%), Gaps = 26/803 (3%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| || || ||||||| ||| ||| ||| |||||||| | || | || |||||| Sbjct 2528 CTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAA-ATTTTTGAA 2586 Query 49633 CTATCAATACATAT-AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| ||||||| ||| ||||||||||| | ||| || ||||||||| Sbjct 2587 CAACCTAAACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTT 2646 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | |||| | ||| || || | |||| | ||| Sbjct 2647 GAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCA 2706 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 ||||||| ||||| || | | | | | || || |||||||| || ||||| | Sbjct 2707 ACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT- 2765 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 |||||||||||| |||||| |||||||| || || || ||| || | |||||| Sbjct 2766 ---ATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATT 2822 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 ||||||||| | ||| || ||| || || | ||||||| |||||| |||| ||||| Sbjct 2823 ACTAAAAGTAAGTCCATGTAATTTATTCTGT-TTTTTAAACCAAAAAATTGCACAAAAAC 2881 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 ||| | ||| | |||||| || ||||| ||| ||||| |||||| || ||| || | Sbjct 2882 TACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA--ATGA 2939 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| ||| ||||||| |||||| || || | | ||||||| Sbjct 2940 ATTTGT-ATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATAT 2998 Query 50050 TTTCTATAGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNNNNN 50103 |||| ||||| | |||| |||| | | ||| |||| Sbjct 2999 TTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCAT------CTTTTATATAATTAT 3052 Query 50104 NNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAA 50163 || | |||| ||| |||| ||||||| ||| | |||||||||||||| |||| Sbjct 3053 CAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAA 3112 Query 50164 ATTGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGAT 50222 ||| | | ||||||| | |||||||| || || | | | | | ||||| || || Sbjct 3113 ATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAA-AAACTTACTAGCCAAATTTTCTAAT 3171 Query 50223 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTA 50282 || ||||||||| ||||| || ||||||||||| | ||||||||||||||||||||| Sbjct 3172 ACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTT 3231 Query 50283 TCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAA 50342 || ||||| ||||| || || | ||| |||||||||||| |||||| ||||||| Sbjct 3232 TCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAA 3291 Query 50343 AATGATGCTACGGATTTTTTATA 50365 ||||||||| | | ||||||||| Sbjct 3292 AATGATGCTTCTGCTTTTTTATA 3314 >seq546 Length=57643 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| |||||||||||||||| ||||| ||| |||||||| ||| Sbjct 56227 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 56286 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| |||||||| || || ||||| |||||||| || ||||| |||||| Sbjct 56287 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56346 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| |||||||| || | ||| || ||||| || Sbjct 56347 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 56406 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 56407 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 194 bits (214), Expect = 3e-44 Identities = 182/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||| ||||| | ||||| ||||| |||||||||| ||||| ||| |||||||| Sbjct 55761 AAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 55820 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | |||| |||||||| || || ||||| |||||||| || ||||| || Sbjct 55821 TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 55880 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 |||||||||||| |||||||| ||||| |||||||| || | ||| || ||||| Sbjct 55881 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTC 55940 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 55941 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| ||||| |||||||||| ||||| || |||||||| ||| Sbjct 55996 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 56055 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| |||||||| || || ||||| |||||||| || ||||| ||||| Sbjct 56056 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 56115 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| || ||||| || | ||| || ||||| || Sbjct 56116 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACA 56175 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 56176 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| |||||||||||||||| || || ||| |||||||| || Sbjct 56458 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAAT 56517 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| |||||||| || || ||||| |||||||| || ||||| |||||| Sbjct 56518 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56577 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| |||||||| || | ||| || || || || Sbjct 56578 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 56637 Query 192490 TCTAGAGTAATGGTTTTACC 192509 || | || || ||||| || Sbjct 56638 TCCAAGGTGATCGTTTTTCC 56657 >seq1515 Length=1449 Score = 147 bits (162), Expect = 4e-30 Identities = 194/263 (74%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||||||| ||| ||||||| |||| | ||| | |||||||||||| |||||||| Sbjct 575 ATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAAC 516 Query 50166 TGTCTTGCTTCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATAC 50224 | | | ||||| | || | | || || || ||| | | ||||| || |||| Sbjct 515 TTTTTAGCTTCA-ATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATAC 457 Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATC 50284 || |||||| ||||| || |||||||| || | ||| ||||||||||||||||| | Sbjct 456 TATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTAC 397 Query 50285 TTTTAAATTTTCCCAAGA--TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAA 50342 ||||| ||||| ||| ||||| ||| |||||||||||| |||||| |||||| Sbjct 396 ATTTAATTTTTCA-AAGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAA 339 Query 50343 AATGATGCTACGGATTTTTTATA 50365 ||||| ||| | | ||||||||| Sbjct 338 AATGAGGCTTCAGCTTTTTTATA 316 >seq380 Length=37146 Score = 116 bits (128), Expect = 7e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||||||||||||| ||| ||| | || || |||||||| || ||||| Sbjct 27394 TCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTTCCTGCAAAA 27335 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 |||||||| |||| || | || ||| |||| ||||| || ||||| ||| | ||| Sbjct 27334 ATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTAATATTT 27275 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 |||| |||| ||||| || || || | ||| ||||| || |||||||||| | | Sbjct 27274 TCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTTTTTACA 27215 Query 192526 AATATCTGCATTTT 192539 ||||| |||||||| Sbjct 27214 AATATTTGCATTTT 27201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984451909401450