Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq598 340 3e-88 seq546 181 2e-40 seq1515 131 3e-25 seq380 116 7e-21 >seq598 Length=26426 Score = 340 bits (376), Expect = 3e-88 Identities = 581/844 (69%), Gaps = 18/844 (2%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||| || || |||| ||| |||||| ||||||||||||||||||| || || |||| Sbjct 2483 ATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTA 2542 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 ||| ||| ||| ||| |||||||| | | || || |||||| | | | | ||| | Sbjct 2543 AATCCATCCAATTAAAAGGATTTTTTGCA-TAAAAAATTTTTGAACAACCTAAACATTCC 2601 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||| | ||| || |||||||| ||||||| || | | Sbjct 2602 AATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATT 2661 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | |||| | ||| || || | |||| | ||| ||||||| ||||| Sbjct 2662 AAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACA 2721 Query 39069 atcataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACA 39127 || | | | | | || || |||||||| || ||||| | ||||| |||||| Sbjct 2722 ATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT----ATATATTAAACA 2777 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||| |||||||| ||||| || ||| || | ||||||||||||||| | ||| Sbjct 2778 ATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCC 2837 Query 39188 -TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 || ||| || || | ||||||| |||||| |||| |||||||| | ||| | || Sbjct 2838 ATGTAATTTATTCTGT-TTTTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTA 2896 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAA 39304 |||| || ||||| ||| ||||| |||||| || ||| || |||| |||||| | Sbjct 2897 TACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA--ATGAATTTGTATCATTT-- 2952 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 ||||| ||| |||||| |||||| || || | | ||||||||||| ||||| | Sbjct 2953 -ATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATG 3011 Query 39365 AAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACAT 39424 |||||| | | ||| | Sbjct 3012 AAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGT 3071 Query 39425 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA 39484 ||| ||||||| ||| | |||||||||||||| ||||||| | ||||||| | Sbjct 3072 TTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAAT 3131 Query 39485 CTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 |||||||| || || | | | | | ||||| || |||| ||||||||| |||| Sbjct 3132 TTGAACTTCTCTTAA-AAACTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTG 3190 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || ||||||||||||| ||||||||||||||||||||| || ||||| ||||| || Sbjct 3191 CAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAAT 3250 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | ||| |||||||||||| |||||| ||||||||| |||||| | | ||||| Sbjct 3251 CTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTT 3310 Query 39664 TATA 39667 |||| Sbjct 3311 TATA 3314 >seq546 Length=57643 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | |||||| |||||||||||||||| ||||| || |||||||||||| Sbjct 56227 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 56286 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || |||||||| || || ||||| |||||||| || || || |||||| Sbjct 56287 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56346 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| |||||||| || ||||| || ||||| || Sbjct 56347 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 56406 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || || || ||||| | |||||||||||| Sbjct 56407 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 179 bits (198), Expect = 7e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||| ||||| | |||||| ||||| |||||||||| ||||| || |||||||| Sbjct 55761 AAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 55820 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 |||||| | || | | || |||||||| || || ||||| |||||||| || || || || Sbjct 55821 TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 55880 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 |||||||||||| |||||||| ||||| |||||||| || ||||| || ||||| Sbjct 55881 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTC 55940 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || || || || ||||| | |||||||||||| Sbjct 55941 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | |||||| ||||| |||||||||| ||||| || |||||||||||| Sbjct 55996 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 56055 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || |||||||| || || ||||| |||||||| || || || ||||| Sbjct 56056 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 56115 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| || ||||| || ||||| || ||||| || Sbjct 56116 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACA 56175 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || || || ||||| | |||||||||||| Sbjct 56176 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 140 bits (154), Expect = 6e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | |||||| |||||||||||||||| || || || ||||||||| || Sbjct 56458 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAAT 56517 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || |||||||| || || ||||| |||||||| || || || |||||| Sbjct 56518 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56577 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| |||||||| || ||||| || || || || Sbjct 56578 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 56637 Query 172023 TCTAGAGTAATGGTTTTACC 172042 || | || || ||||| || Sbjct 56638 TCCAAGGTGATCGTTTTTCC 56657 >seq1515 Length=1449 Score = 131 bits (144), Expect = 3e-25 Identities = 181/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 ||||||| |||| | ||| | |||||||||||| |||||||| | | ||||| | | Sbjct 559 TTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCA-ATT 501 Query 39484 ACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 39542 | | | || || || ||| | | ||||| || |||| || |||||| ||| Sbjct 500 ATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCT 441 Query 39543 GCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA 39602 || || |||||||| |||| ||| ||||||||||||||||| | ||||| ||||| || Sbjct 440 GCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCA-AA 382 Query 39603 GA--TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATT 39660 | ||||| ||| |||||||||||| |||||| |||||||| || ||| | | || Sbjct 381 GTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTT 323 Query 39661 TTTTATA 39667 ||||||| Sbjct 322 TTTTATA 316 >seq380 Length=37146 Score = 116 bits (128), Expect = 7e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCC-AATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||||| ||||| | ||| ||| | |||||||| || |||||||||||||| Sbjct 27385 ATATTATAATCATTTAAAGTTT-TTCCACATTCTAATTGTTTTCCTGCAAAAATTAATCT 27327 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||| ||| | || ||| |||| ||||| || ||||| ||| | ||| ||||| Sbjct 27326 TTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTAATATTTTCAATAGT 27267 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||| ||||| || || || | ||| ||||| || |||||||||| | ||||| || Sbjct 27266 ATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTTTTTACAAATATTTG 27207 Query 172067 CATTTT 172072 |||||| Sbjct 27206 CATTTT 27201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905110803276600