Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq288 194 5e-44 seq546 129 2e-24 seq1815 120 9e-22 seq661 100 8e-16 seq139 91.5 4e-13 seq2105 84.2 6e-11 seq368 84.2 6e-11 >seq288 Length=69584 Score = 194 bits (214), Expect = 5e-44 Identities = 359/516 (70%), Gaps = 13/516 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||||| | || | ||||| ||||||||||| ||| || || || Sbjct 40398 CTATCAAATCTACCAGGTCTTGTAATAGCTGGATCTAATATATCTATTCTATTAGTCCCT 40457 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATT 288963 || ||||| | | || ||| | | | | |||||||||||| || || ||| Sbjct 40458 GCTAATACTATTACTTTATCATTTGATGTA-TGAAATCCATCCAT--TTCAACAAGCATT 40514 Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCt 289022 ||||| | ||| | ||| |||||||||||| |||| || | ||| | | | || | Sbjct 40515 TGATTTAATGTATTTTCTCTTTCATCATTTCCTCCTCCTGCAAAACCACCTTTTGATCTT 40574 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||||||||| |||||||| || || || | | | || |||| || ||| || Sbjct 40575 TTTCTT-CCAACAGCATCTATTTCGTCTATAAATATAATAGAAGGTGAATGTTTTCTTGC 40633 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 ||||||||||||||| || | |||| |||| |||||| | | ||||| ||| || Sbjct 40634 TTGTGCAAATAATTCTCTAACCCTAGATGGACCAATTCCAACAAATACTTCTATAAAATC 40693 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | | || | || |||| |||||||||||| |||||||| || | || || || Sbjct 40694 ACTACCACTTATGTTAAAAAATGGTACATTTGCTTCTCCTGCTACAGCTTTAGCTAGTAG 40753 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| || ||||| || |||| || ||||| | |||| || |||| |||||| || Sbjct 40754 TGTTTTTCCTGTACCTGGTGCACCACATAATAAAGCTCCTTTAGGTATTTTTGCACCTAA 40813 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | | |||||| || | |||||||| || || | |||| || ||| | |||||| Sbjct 40814 ATTTTCATATTTAGTAGAATTTTTTAAAAAATCAACGAATTCCATAATTTCTTCTTTTGC 40873 Query 289323 CT-CATCACATCCTGCTACATCAGCAAAAGTAATAT 289357 | ||| | || || ||| |||||||||| || Sbjct 40874 TTGTTTCATA-CCAGCAACACTTGCAAAAGTAACAT 40908 >seq546 Length=57643 Score = 129 bits (142), Expect = 2e-24 Identities = 426/657 (65%), Gaps = 9/657 (1%) Strand=Plus/Plus Query 155891 CCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 |||| ||||||| | | || | | |||||| | ||| |||||| |||||| || Sbjct 5436 CCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAA 5495 Query 155951 AAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 | || || || | | || || | || ||||| || | | |||| || || Sbjct 5496 TAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAA 5555 Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACC 156067 ||||| | ||| ||| || | ||| | ||||| || || || || || ||| Sbjct 5556 TATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACC 5615 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA-TAATACCATTGG 156126 ||||||||||| | ||| || | || || || | || ||| || | |||| || || | Sbjct 5616 TTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTG 5674 Query 156127 AAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTC 156186 | | ||||| ||||| | |||| ||| | || | || || | || | Sbjct 5675 ATATACCATTTGTTCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACTGCTACAC 5734 Query 156187 CAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTT 156246 |||||||||||| |||| || ||| |||| ||||| || | ||||| |||| Sbjct 5735 CAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTT 5794 Query 156247 CAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTC 156306 |||| ||||| ||| ||| |||||| | | || || | || |||| |||||| | Sbjct 5795 CAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCC 5854 Query 156307 CAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATG 156366 | | || |||| ||| ||||||||||| ||||||| || | ||||| || |||| Sbjct 5855 CTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATG 5914 Query 156367 TCTCCTTAAT--CTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACAT 156424 | || |||| || || |||| | || |||| || || || ||||| || Sbjct 5915 TTTC--TAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAA 5972 Query 156425 ATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGT 156484 ||| || || | |||| ||| || ||| |||| | |||| | ||| | || Sbjct 5973 ATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGT 6032 Query 156485 TTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAATCATTTCATCTAA 156541 |||||| || ||||||||| | ||||||||| | ||||||||| || || ||| Sbjct 6033 TTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATTTAA 6089 >seq1815 Length=2243 Score = 120 bits (132), Expect = 9e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTC 289178 ||||||| |||||||| ||||||| ||| | ||| |||| || || | ||||||||||| Sbjct 2077 ACCAACAAACATTTCTTCAAATTCTGAACCAGATGCTTGGATAAAAGGCACATTTGCTTC 2018 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 ||||| | ||||| || | | ||| || |||||||||||| || ||||| | Sbjct 2017 CCCTGCAATAGCCCTAGCAATTAATGTTTTTCCTGTTCCAGGTTCACCTGATAATAATAT 1958 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 || || || | |||||| || || |||| || | | |||||| | || | Sbjct 1957 ACCTTTGGGCAATTTTGCACCTATTTTAGTAAATTTATCTGAATTTTTTAAATAATCGAT 1898 Query 289299 AATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||| | |||||| | |||| | |||||||||||| |||||| || ||||| Sbjct 1897 TATTTCTTGAAGTTCTTGTTTTACTTCATCACATCCTTTTACATCTGCTAAAGT 1844 >seq661 Length=112613 Score = 100 bits (110), Expect = 8e-16 Identities = 269/403 (67%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| ||||| | | | ||| || ||||| ||||| ||| || ||||| Sbjct 60431 CTGTCAAATCTACCTGGTCTAAGTAAAGCACTATCTAACGTATCGATTCTATTCGTTGCA 60372 Query 288910 GCCAATACAACAATAGATTCGGT-TTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 | | || | ||| | | || ||||| |||||||||||| | ||| | |||||| Sbjct 60371 CCTATCACCATTATATGTACAGTATTGCT-AAATCCATCCATTTCTACTAATAATTGATT 60313 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTG--AACCTC-TTGAATCACCC-GAATCGCTCCttt 289024 || ||||| || ||| || | | | || | || ||| | || ||| || || | Sbjct 60312 TAGCGTTTGATCATGTTC-TCTCTGGCCAGCCCCATTAAATGATCCAGAA---CTTCTCT 60257 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 | || | ||| |||||||| ||||| |||| | | || | | | ||| ||| Sbjct 60256 TCCCTCCTATAGCGTCAATTTCATCAATAAAAACAATTGATGGTGCAACTGATCTTGCAT 60197 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||| | ||||| | |||||| | || ||||| ||||||| |||||||| Sbjct 60196 GTGCAAATAACTGTCTTATTCTTTTTGCTCCTTGTCCTACATATATTTCTATAAATTCAG 60137 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || | ||| ||| ||||| ||||| |||||||||||| || | | | Sbjct 60136 GACCAGAAGTATAAATATATGGAACATTGGCTTCTGTTGCTACTGCCCTTGCTAACATGG 60077 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 | ||||||| ||| |||||||| ||| | ||| ||||| || Sbjct 60076 TTTTACCTGATCCTGGTGGTCCTACTAGCAAAACACCCTTAGG 60034 >seq139 Length=46061 Score = 91.5 bits (100), Expect = 4e-13 Identities = 261/395 (66%), Gaps = 15/395 (4%) Strand=Plus/Minus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 ||||| | ||| ||| | | ||||| | | | || ||||||||| | | || Sbjct 37448 AATGTGAGAATATGGGAAGCAAATGGAACTAGAGAATTTTTAGATAATAGAAATTTATTT 37389 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| | |||| | ||||| ||||| || ||||| |||||||||||| || Sbjct 37388 GATAGAGAAGTAAATGATTTAGGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCT 37329 Query 381082 GATTATGATAAT-TGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| ||| ||| || | ||||| | ||| || | || || ||||| |||| Sbjct 37328 GAATATACAAATATGT-ATGATAATTATGATAATAAAGGAATTGATCAACTAAAAAATAT 37270 Query 381141 CATAGACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTG 381200 ||| | | |||||||| ||| || || | | | | | ||| || ||| || Sbjct 37269 TATAAATTTGATAAAAAAT---GAACCATTAAGTAGAAG---AATTATTTTGTGTGCATG 37216 Query 381201 GAATCCTTGCCAGATTA--ATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTC 381258 ||| | | |||| || | ||||| ||||||||||| |||||||||||||| || Sbjct 37215 GAA--CGTAAAGGATTTGGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTT 37158 Query 381259 AATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGT 381318 || ||| | ||| || ||| ||| | ||||| || ||||| | || Sbjct 37157 TATATTTTCGATGG---GAAATTATCATGTATCATGTATCAACGATCTTGTGATTTAGGG 37101 Query 381319 CTGGGTGTTCCATTCAATATTGCTTCGTATTCTAT 381353 || |||||||| ||||||||||| || || || || Sbjct 37100 CTTGGTGTTCCCTTCAATATTGCCTCTTACTCAAT 37066 >seq2105 Length=3515 Score = 84.2 bits (92), Expect = 6e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| | ||||| ||||||||| || ||||| | | Sbjct 2762 ATTTCTCACTGTTCTATCATACTGTACCATAACATCTTCCATAGCTTTAATTAATCTTCT 2821 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || |||||||||||| |||||||| ||| |||||||| | ||| | | ||| || Sbjct 2822 TTGTATATAACCAGTTTCTGATGTTTTACAAGCAGTATCAATAATACCTTCTCTACCTCC 2881 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 ||||||||| || || | |||| ||| |||||| Sbjct 2882 CATAGCATGAAAAAACACTTCTTGTGGTGTTAGCCC 2917 >seq368 Length=17949 Score = 84.2 bits (92), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 302487 TGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTAC 302546 ||| ||||| || || || || || || ||||||| || | || | | ||| | ||| Sbjct 14572 TGGATCAATACCATCTTCACCATATAAAAACTGAATAATAGTATTATCTTCATTACGTAC 14513 Query 302547 GGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATA 302606 || ||||||| | |||| |||||||| || ||||||| | || ||||| Sbjct 14512 AGTACCATCATAATGTAAAATAACAGATTCCATACATTTAATTAAACATCTTTGTATATA 14453 Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||| | ||| ||||||||||| ||||||||||| || | | |||| |||| ||| Sbjct 14452 ACCAGATTTAGCAGTTTTTACAGCAGTATCAATTAGTCCTTCTCTACCAGACATACAATG 14393 Query 302667 GAAGAA 302672 || || Sbjct 14392 AAAAAA 14387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471775603984499