Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq84 93.3 5e-14 seq535 84.2 3e-11 >seq84 Length=27429 Score = 93.3 bits (102), Expect = 5e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 194587 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 194646 ||||| ||||| || || |||||||| || | | ||||| ||||| | ||||| || Sbjct 3558 AAAATATTTATTGGTCCTACTTATTATCAGAGATTAAAACATATGGTAGAAGATAAGATA 3617 Query 194647 CATGCTAGAAGTCATGGGCAAGTAACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 194705 |||||||||||| || | |||||| |||| ||||||||| ||| | || Sbjct 3618 CATGCTAGAAGTAGAGGACCTTTAACTATGATTAC-GAGACAACCAACAGAAGGTAGATC 3676 Query 194706 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTAT 194750 | || ||||||| | ||||||| |||||||||| ||||||||| Sbjct 3677 ACGAGATGGAGGTCTCCGATTTGGTGAAATGGAAAGAGACTGTAT 3721 >seq535 Length=55029 Score = 84.2 bits (92), Expect = 3e-11 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 194581 GAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGAT 194640 |||| | | |||||||| || || | ||||| || || |||||||||||| ||||| Sbjct 23061 GAAACTTATATTTTTATGGGACCTATATATTATCAAAAACTAAAACACATGGTTCAGGAT 23002 Query 194641 AAAATGCATGCTAGAAGT-CATGGGCAAG-TAACTACTTTACATCGACAACCAAATTGTG 194698 ||||| |||||||| | | | |||| || ||| || | ||||||||| | | Sbjct 23001 AAAATACATGCTAGGGCTAGAGGACCAAGACAATTAC--TAACTAGACAACCAACTGAAG 22944 Query 194699 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCC 194758 || | || ||| ||||| ||| || ||||||||||||||| ||| || | | | Sbjct 22943 GTAGATCAAAAGAAGGAGGATTACGACTTGGAGAAATGGAAAGAGATTGCTTAATTGCAT 22884 Query 194759 ATGGTGCTACTCAAT-TCTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTC 194817 |||||| || |||| | || ||||||| || | || | |||| | | | || Sbjct 22883 ATGGTGTTA-GCAATCTACTACTTGAAAGATTGATGCTGAGTAGTGATGTGTGTGATGTT 22825 Query 194818 GATGTTTGCACAGAATGTGGTATGAT 194843 || ||||| ||| ||||| ||||| Sbjct 22824 TATATTTGCCAAGACTGTGGCATGAT 22799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632471993070760