Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq546 131 2e-25 >seq546 Length=57643 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || |||||||| || ||| | | Sbjct 56453 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATCG 56394 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| || || ||||| || ||||||||||| |||||||| Sbjct 56393 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 56334 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || ||||| || || || |||||||| |||| | |||||||||||| Sbjct 56333 CAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAAC 56274 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || || || ||||| || |||| || || || ||||| | ||||| |||| Sbjct 56273 ATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGAGGAA 56222 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || ||||| || ||| | | Sbjct 55991 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 55932 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| || || ||||| || ||||||||||| |||||||| Sbjct 55931 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 55872 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || ||||| || || || |||| ||| |||| | |||||||||||| Sbjct 55871 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 55812 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || ||||||| || || ||||| | ||||| Sbjct 55811 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55765 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || ||||| || ||| | | Sbjct 56222 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 56163 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| | ||| || ||||| || |||||||| || || ||||| Sbjct 56162 GATACCATTGAGAATGTTAAGGCGAAA-ATTCAAGATAAGGAAGGAATTCCACCAGATCA 56104 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | || || ||||| || || || |||| ||| |||| | ||||||||||| Sbjct 56103 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 56044 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 ||| || || ||||| || ||||||| || || ||||| | ||||| |||| Sbjct 56043 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGAGGAA 55991 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || ||||| || ||||||||||| |||||||| ||| | || || ||||| || || Sbjct 56600 AAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAG 56541 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| ||| |||| | | |||||||||||| ||||||||||| || |||| Sbjct 56540 CAATTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTTACAT 56481 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || || || ||||| | ||||| |||| Sbjct 56480 TTAGTCTTACGATTAAGAGGAGGAGGAA 56453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885075975560