Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq546 178 2e-39 seq380 143 4e-29 >seq546 Length=57643 Score = 178 bits (196), Expect = 2e-39 Identities = 177/227 (78%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || |||||||| || || || | ||||| ||| ||| Sbjct 56452 TGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATCG- 56394 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | |||||||| ||||| ||| ||| ||||| || ||||||||||| Sbjct 56393 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 56334 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| || ||||| || ||| ||||| ||| |||||||||| Sbjct 56333 CAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAAC 56274 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || |||||||| ||| | |||||||| ||||||||||||||||| Sbjct 56273 ATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 56227 Score = 174 bits (192), Expect = 2e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || |||||||| || || || | ||||| ||| ||| Sbjct 55990 TGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG- 55932 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | |||||||| ||||| ||| ||| ||||| || ||||||||||| Sbjct 55931 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 55872 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| || ||||| || ||| ||||| ||| |||||||||| Sbjct 55871 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 55812 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || |||||||| ||| | || ||||| |||||||||||||||||| Sbjct 55811 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 55764 Score = 172 bits (190), Expect = 9e-38 Identities = 176/227 (78%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || |||||||| || || || | ||||| ||| ||| Sbjct 56221 TGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG- 56163 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || ||||| ||| ||| ||||| |||||||| ||||| Sbjct 56162 GATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 56103 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| || ||||| || ||| ||||| ||| |||||||||| Sbjct 56102 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 56043 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||| |||||||| ||| | || ||||| ||||||||||||||||| Sbjct 56042 ATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55996 Score = 156 bits (172), Expect = 7e-33 Identities = 161/207 (78%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 146052 TTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAA 146110 |||| ||||||||| || || | ||||| || ||| ||||| ||| | |||||||| Sbjct 56662 TTAA-AGGAAAAACGATCACCTTGGATGTTGAGTCATCG-GATACCATTGAGAATGTAAA 56605 Query 146111 AAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGG 146170 ||||| ||| ||| ||||| || ||||||||||| |||||| | || |||||||| Sbjct 56604 GGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGG 56545 Query 146171 TAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTAT 146230 || ||||| || ||| ||||| ||| ||||||||| || ||||| ||||| ||| | Sbjct 56544 AAAGCAATTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTT 56485 Query 146231 CCATTTAGTATTACGATTAAGAGGAGG 146257 |||||||| ||||||||||||||||| Sbjct 56484 ACATTTAGTCTTACGATTAAGAGGAGG 56458 >seq380 Length=37146 Score = 143 bits (158), Expect = 4e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||||||||| |||||||||||| |||||||||||| | |||| || ||| || | Sbjct 27205 TGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGTA- 27263 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||| | ||| ||||| || ||| |||| ||||| | ||| || Sbjct 27264 GATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGACGAA 27323 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | ||||||||||| ||||||||||| | | ||| |||| ||||||||| Sbjct 27324 CAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTATAAT 27383 Query 146211 ATACAAAAAGAATCGACT 146228 || || |||||||| ||| Sbjct 27384 ATCCAGAAAGAATCCACT 27401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786144515092840