Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq546 120 2e-22 >seq546 Length=57643 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || || | || || || | || |||||||| || ||||||||||| | Sbjct 55995 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 56054 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || || ||| |||| |||||||||||||| || || Sbjct 56055 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGG 56114 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || || ||||| |||||| | || ||| | || | || || || ||| | Sbjct 56115 AATTCCTTCCTTATCTTG-AATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAA 56173 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || || || |||||||| ||||||||||||||| Sbjct 56174 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || || | || ||||| | || |||||||| || ||||||||||| | Sbjct 56226 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 56285 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || || ||| |||| |||||||||||||| || || Sbjct 56286 TAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 56345 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || || ||||| |||||| | || ||| | || | || || || ||| | Sbjct 56346 TATTCCTTCCTTATCTTG-AATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAA 56404 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || || || |||||||| ||||||||||||||| Sbjct 56405 CATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || || | || || || | || |||||||| || ||||||||||| | Sbjct 55765 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 55824 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || || ||| |||| |||||||||||||| || || Sbjct 55825 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 55884 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | || ||| | || | || || || ||| || Sbjct 55885 ATTCCTTCCTTATCTTG-AATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 55943 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || || |||||||| ||||||||||||||| Sbjct 55944 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208744549007