Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1418 93.3 6e-14 seq139 91.5 2e-13 >seq1418 Length=1421 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 ||| || |||||||||||||||||| |||||||| |||||||| |||||||||||| | Sbjct 1188 TGGAATAAATGCAATTGTAGCAATTATGTGTTACACAGGATACAACCAAGAAGATAGTTT 1247 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 || | ||| || |||||||||| | ||| |||| Sbjct 1248 AATCATGAATCAATCATCTATTGATCGGGGTCTATT 1283 >seq139 Length=46061 Score = 91.5 bits (100), Expect = 2e-13 Identities = 403/621 (65%), Gaps = 23/621 (4%) Strand=Plus/Minus Query 180392 ACAACaaaaaaaaTAGTTTATAAAAATA-TTCTTAAAGAATTATTATGGATAATGAAAGG 180450 ||||| || ||| || ||||||| | | || || |||||||| | ||| | || | ||| Sbjct 37538 ACAACCAAGAAATTA-TTTATAAGAGGAATTATTGAAGAATTACTTTGGTTTATAAGAGG 37480 Query 180451 TTTAACAAATTCTAAT---TTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGG 180507 ||||||| ||| ||||||||| | | || | | | | ||| | | ||||| Sbjct 37479 GGAAACAAATGGAAATATTTTGTTAAATAAAAATG---TGAGAATATGGGAAGCAAATGG 37423 Query 180508 TTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTT--TCGAAAAGAAGGTGATTTAGGA 180565 | | | ||||||||| | | |||| |||| | || ||| | ||||||||| Sbjct 37422 AACTAGAGAATTTTTAGATAATAGAA-ATTT-ATTTGATAGAGAAGTAAATGATTTAGGT 37365 Query 180566 CCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGA-CTGTGATACCAA 180624 ||||||||||| ||||||||||||||| |||||| |||||| | ||| || || Sbjct 37364 CCAATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACAAATATGT-ATGATAA 37306 Query 180625 CTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCC 180684 ||| |||| || || ||| ||| | ||||| | ||||||||| | || Sbjct 37305 TTATGATAATAAAGGAATTGATCAACTAAAAAATATTATAAATTTGATAAAAAATGAACC 37246 Query 180685 CGAATGCCGAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCT 180744 | | ||||||| || | | ||||| ||| | || | ||||| | Sbjct 37245 ATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTAAAGGATTTGGATAAAATGGCATT 37186 Query 180745 TCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAAT-AAAATTTATTTAGATTGCC 180803 ||||| ||||| ||| ||||||||| || || || |||| | | | Sbjct 37185 ACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTATCATG--TATC 37128 Query 180804 AATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATT 180863 | |||||||| ||||| |||||||| | ||||| || | |||||||| | || | Sbjct 37127 A--TGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCCTTCAATATTGCCTCTTACT 37070 Query 180864 CATTTTT--GGTATGTGTTCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCA 180921 || |||| || || | ||| |||| || || ||| |||| | |||| || || Sbjct 37069 CAATTTTCACCTACATGCTTGCTC-AAGT-ATGTAACTTACAACCTGCAGAATTCATACA 37012 Query 180922 CACTTTTGGGGATGTTCATGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAG 180981 | ||| || ||| ||| ||||| || ||||| || ||||||||||| ||| Sbjct 37011 CGTTTTAGGAAATGCTCACATATATAACAATCATATAGATAGTCTAAAAATTCAACTAAA 36952 Query 180982 CAGAAACCCTTACAAGTTTCC 181002 ||||| || ||| ||||| Sbjct 36951 CAGAATTCCCTACCCTTTTCC 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655261758643000