Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq84 87.8 2e-12 >seq84 Length=27429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 193344 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 193403 ||||| ||||| || || |||||||| || | | ||||| ||||| | ||||| || Sbjct 3558 AAAATATTTATTGGTCCTACTTATTATCAGAGATTAAAACATATGGTAGAAGATAAGATA 3617 Query 193404 CATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193462 |||||||||||| || | | |||| |||| ||||||||| ||| | || Sbjct 3618 CATGCTAGAAGTAGAGGACCTTTAACTATGATTAC-GAGACAACCAACAGAAGGTAGATC 3676 Query 193463 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTAT 193507 | || ||||||| | ||||||| |||||||||| ||||||||| Sbjct 3677 ACGAGATGGAGGTCTCCGATTTGGTGAAATGGAAAGAGACTGTAT 3721 Score = 86.0 bits (94), Expect = 8e-12 Identities = 124/172 (72%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 192500 ATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTAATAAATT 192556 |||| | ||||| || | ||||||||| ||||| || ||| | | | || | || Sbjct 2354 ATTATACTATCCCCAGAGACCACTTGTATGTACCAAAGTTATGGAATATCTTCGTT--TT 2411 Query 192557 AGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAA 192616 ||| || ||| |||||| ||||| || |||||||| |||||||| || ||||| Sbjct 2412 AGA-GACCTCCCAGCTGGTATCAATGCAATAGTTGCTATTATGTGCTATACAGGATATAA 2470 Query 192617 CCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 192668 ||||||||||||| |||| | || || |||| || || || || |||||| Sbjct 2471 CCAAGAAGACAGTCTTATAATGAACCAATCTTCCATCGACAGGGGTTTATTT 2522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628513703262720