Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq546 91.5 3e-13 >seq546 Length=57643 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| || |||||||| |||| ||||| | ||||| || Sbjct 55794 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCC 55853 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||| ||| | || ||||| |||||||||||||||| || || || Sbjct 55854 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 55913 Query 81755 TATATTTTCAATCGTAT 81771 || ||| ||||| |||| Sbjct 55914 TACATTCTCAATGGTAT 55930 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| |||||||| |||||||| |||| ||||| | ||||| || Sbjct 56025 AGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCC 56084 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||| ||| |||| | ||| |||||||||||||||| || || || Sbjct 56085 TGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTT 56144 Query 81755 TATATTTTCAATCGTAT 81771 | ||| ||||| |||| Sbjct 56145 AACATTCTCAATGGTAT 56161 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| || |||||||| |||| ||||| | || || || Sbjct 56256 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTGCTTTCC 56315 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||| ||| | || ||||| |||||||||||||||| || || || Sbjct 56316 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 56375 Query 81755 TATATTTTCAATCGTAT 81771 || ||| ||||| |||| Sbjct 56376 TACATTCTCAATGGTAT 56392 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| ||||||| || || |||||||| ||| ||||| | ||||| || Sbjct 56487 AGTAGATTCCTTTTGGATGTTATAATCTAATAATGTTCTTCCATCTTCCAATTGCTTTCC 56546 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||| ||| | || ||||| |||||||||||||||| || || || Sbjct 56547 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 56606 Query 81755 TATATTTTCAATCGTAT 81771 || ||| ||||| |||| Sbjct 56607 TACATTCTCAATGGTAT 56623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903386051290720