Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq546 111 4e-19 >seq546 Length=57643 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | |||||||| || ||||| | || || ||| || || Sbjct 55988 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 55929 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| || |||||||| || |||||||| || || ||| Sbjct 55928 ACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAA 55869 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || |||||||| |||||||||||||| || || | ||||| ||| || Sbjct 55868 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATC 55809 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||||| |||||| | ||| | || || Sbjct 55808 CAGAAAGAATCTACTTTACACTTAGTCTT 55780 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | |||||||| || ||||| | || || ||| || || Sbjct 56219 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 56160 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || |||||||| || ||||||||| || || ||| Sbjct 56159 ACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAGCAA 56100 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || |||||||| |||||||||||||| || || | ||||| ||| | Sbjct 56099 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATA 56040 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||||| |||||| | ||| | || || Sbjct 56039 CAGAAAGAATCTACTTTACACTTAGTCTT 56011 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||||||||||||||| ||||| || || || || || | || |||||| || Sbjct 56658 AGGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAA 56599 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 |||||||| || |||||||| || || |||||| | || || || |||||||| Sbjct 56598 AATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCA 56539 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 206367 |||||||||||||| || || ||||| ||| |||| || || |||||| Sbjct 56538 ATTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACT 56487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181787078590067