Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq546 122 8e-23 seq380 82.4 7e-11 >seq546 Length=57643 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || ||||| | |||||| |||| || ||| | Sbjct 56453 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATCG 56394 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | ||||| |||||| ||||| || || ||||| ||||||||| Sbjct 56393 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 56334 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTACA 25352 |||||| | || | | || || ||| | || |||| ||| | | ||| ||||| | Sbjct 56333 CAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCA--GATTATA 56276 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 | || || |||||||| || | |||||||| ||| |||| ||||||||| Sbjct 56275 ACATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 56226 Score = 120 bits (132), Expect = 3e-22 Identities = 300/449 (67%), Gaps = 14/449 (3%) Strand=Plus/Plus Query 137019 GTACAGATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGT 137078 ||| | ||| |||||| |||| || || ||||| ||||| || || ||||||| ||| | Sbjct 4599 GTAAATATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGA 4658 Query 137079 CGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTG 137138 || || ||||| || | | |||||||| | ||| || ||| | || || Sbjct 4659 TGCAGTAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTC 4718 Query 137139 CTTGAGCTCTTTCCAGTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAACTG 137198 || || || |||| ||||| || || |||||||||||| |||||| || Sbjct 4719 TTTAAGTTCAGTCCAATTCCAATATTTATTATCAACCTTTATATTCCACATATCAAATTG 4778 Query 137199 CAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGC 137258 | || || | || || ||||| || ||||||| |||||| | || | | || || Sbjct 4779 AAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGC 4838 Query 137259 CAGTTCAATACTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAA 137318 | ||| ||| | ||| ||| |||| || |||||||| | ||| || |||| || Sbjct 4839 TAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAA 4898 Query 137319 TTCTCTAGCTTCTTGGCTG--TCGTAGGGCATATCCAATATAGC--GAAAGCATCTGCAA 137374 |||| | ||||| | ||| ||||| || ||||| | | ||| || | ||| || | Sbjct 4899 TTCTTTTGCTTCAT--CTGATTCGTAAGG-ATATCTTA-AAAGCATAAATGTATCAGCTA 4954 Query 137375 GTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAATTTGATATTTGAG---CGCTAA 137431 |||||| | ||| || || || ||||| ||| | |||||| ||| || | ||| Sbjct 4955 ATCCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAA 5014 Query 137432 CAAGCGGATAAAAGTTTGCGTCTATAATT 137460 || |||||| | ||| ||||||||| Sbjct 5015 CA---GGATAATAATTTCTTTCTATAATT 5040 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || ||||| | ||||| |||| || ||| | Sbjct 55991 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 55932 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | ||||| |||||| ||||| || || ||||| ||||||||| Sbjct 55931 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 55872 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTACA 25352 |||||| | || | | || || ||| | ||||||| ||| | | ||| ||||| | Sbjct 55871 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCA--GATTATA 55814 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || || |||||||| || | || ||||| ||| |||| |||||||| Sbjct 55813 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55765 Score = 105 bits (116), Expect = 6e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAA 25260 |||||| ||||||| | || || || | || || |||| || ||| | ||||| || Sbjct 56657 GGAAAAACGATCACCTTGGATGTTGA-GTCATCGGATACCATTGAGAATGTAAAGGCGAA 56599 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| ||||| || || ||||| ||||||||||||||| | || | | || || || Sbjct 56598 AATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCA 56539 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | | ||||||| |||| | ||||| || || ||||| ||||| || | ||||| Sbjct 56538 ATTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTTACATTT 56479 Query 25381 AGTGTTAAGATTGAGAGGAGGA 25402 ||| ||| |||| ||||||||| Sbjct 56478 AGTCTTACGATTAAGAGGAGGA 56457 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || ||||| | ||||| |||| || ||| | Sbjct 56222 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 56163 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || |||||| ||||| || || || || || |||||| Sbjct 56162 GATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 56103 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTACA 25352 |||||| | || | | || || ||| | ||||||| ||| | | ||| ||||| | Sbjct 56102 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCA--GATTATA 56045 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 | || || |||||||| || | || ||||| ||| |||| ||||||||| Sbjct 56044 ACATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 55995 >seq380 Length=37146 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | |||||||||||||||| |||||| | || | | || || ||| | Sbjct 27201 AAAATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCA 27260 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 |||||||| || | | ||| ||||||| ||||| || | || || | ||| Sbjct 27261 GTAGATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGAC 27320 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 | |||||| | |||| | || |||||| | ||| || | || | | | ||||| Sbjct 27321 GAACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTAT 27380 Query 25352 AATATTCAAAAAGAATCCAC 25371 ||||| || ||||||||||| Sbjct 27381 AATATCCAGAAAGAATCCAC 27400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445082009684640