Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq546 89.7 4e-13 >seq546 Length=57643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| ||||| ||||| || |||||||| ||| | || ||| | Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || |||||| || || ||||| | || ||||| Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 56104 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||| | || | ||| || || ||||| |||||| | ||| | ||||| || Sbjct 56103 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 56044 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||||| ||||||||||| |||| ||||| || | ||| |||||||| Sbjct 56043 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 55995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| ||||| ||||| || |||||||| ||| | || ||| | Sbjct 55992 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 55933 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || |||||| || || ||||| | || ||||| Sbjct 55932 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 55873 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||| | || | ||| || || ||||| |||||| | ||| | ||||| || Sbjct 55872 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 55813 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || ||||||||||| |||| ||||| || | ||| ||||||| Sbjct 55812 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402318680146016