Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq546 89.7 5e-13 >seq546 Length=57643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| || | ||| | || || |||||||| ||| || || || ||||| ||||| | Sbjct 56226 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 56285 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || |||| | || |||| ||||| || |||||||| || | ||||| || | || Sbjct 56286 TAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 56345 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | ||||| || ||| ||| || || | | | | | || || ||||| | Sbjct 56346 TATTCCTTCCTTATCT-TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAA 56404 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | |||||| || || || ||||| |||||||||||||||||||||| Sbjct 56405 CATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTC 56455 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| || | ||| | || || || ||||| ||| || || || ||||| ||||| | Sbjct 55995 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 56054 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || |||| | || |||| ||||| || |||||||| || | ||||| || | || Sbjct 56055 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGG 56114 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 || | ||||| || ||| ||| || || | | | | | || || ||||| | Sbjct 56115 AATTCCTTCCTTATCT-TGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAA 56173 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | ||||| || || || ||||| |||||||||||||||||||||| Sbjct 56174 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTC 56224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450781051033160