Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq546 104 2e-17 >seq546 Length=57643 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 55765 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 55824 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | || || |||||||| || || | ||||||||||| || Sbjct 55825 AATGTTCTTCCA-TCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 55883 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||| ||||| || ||||||||||| || || || | || || || ||||| || Sbjct 55884 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 55943 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 55944 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | ||| || || | |||| || ||||| || || ||||| || || | Sbjct 56226 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 56285 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | | | | || || | || || |||||||| || || | ||||||||||| | Sbjct 56286 TAATGTTCTTCCA-TCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 56344 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 |||| ||||| || ||||||||||| || || || | || || || ||||| | Sbjct 56345 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAA 56404 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 56405 CATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 55995 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 56054 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | | | | || || | || || |||||||| || || | |||||||| || | Sbjct 56055 TAATGTTCTTCCA-TCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTG 56113 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| || || || | || || || ||||| | Sbjct 56114 GAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAA 56173 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 56174 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505384330972040