Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq546 453 2e-122 seq598 277 2e-69 seq1515 196 7e-45 >seq546 Length=57643 Score = 453 bits (502), Expect = 2e-122 Identities = 1063/1577 (67%), Gaps = 43/1577 (3%) Strand=Plus/Plus Query 68693 CTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAA 68752 || |||| | ||| ||||| || | ||||| ||| | ||||| | | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 68753 TATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAG 68812 |||| || || || ||||| | ||||||||| ||||| | || || | ||| ||||||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 68813 TTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTA 68872 | ||||||||||| | | ||| |||||| | |||||| || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 68873 GATGTTTCCAATCCCAAAGATCAGATGGTACAAC------ATTCCAAAGATCGTATTGTA 68926 | | |||||| |||| | | | | |||| |||||| | ||| |||| | Sbjct 4724 GTTCAGTCCAATTCCAATATTTA--TTAT-CAACCTTTATATTCCACATATCAAATTGAA 4780 Query 68927 GAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 |||| || | || || || | ||| | |||||| || | || ||||| Sbjct 4781 GAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTA 4840 Query 68987 GTTC-ACA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 ||| | | || | ||||||||| | ||||| || ||||| ||||| | ||||| | Sbjct 4841 ATTCCATAGACATT--TCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAA 4898 Query 69045 ATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 |||| |||||| ||| | ||||| |||||| ||||||| ||| || ||||| Sbjct 4899 TTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCC 4958 Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164 || || ||||| || || ||||||||||| | ||||| |||||||||||| || ||| Sbjct 4959 TTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGG 5018 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTC--GGACTACTACTTTAACCACGTCC 69222 ||||||||| | ||||||||||| | | ||||| | | || | |||| | || Sbjct 5019 ATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAAT--TTTAGTAATTTCA 5076 Query 69223 TTTAGTTTGAGAAAATCAAA---TCGTCCATCTATA---ACAAACATATTCAGTGCTACA 69276 | || ||| ||||| ||| | | ||| || ||||| || | || | | Sbjct 5077 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 5136 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 ||||||| |||||||| || || |||| | || ||||| ||||| || |||| Sbjct 5137 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 5196 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 |||||||||||||| || ||||| | ||||| |||||| || ||||| | || Sbjct 5197 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 5256 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 || || | ||| | || ||| ||||| || ||| || | ||||| ||| | Sbjct 5257 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATA-- 5314 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGC 69513 | || || | || || || || | | || |||| |||||||| | ||||| Sbjct 5315 AATCTTGCGCTAAT-ACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 5373 Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAAT 69573 ||| ||||| || ||||| ||| || || |||||||||||||||||||| ||| Sbjct 5374 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 5433 Query 69574 GACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 | ||| | || || ||||||| ||||||||| | ||| || | ||||| ||| | Sbjct 5434 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 5493 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || | |||||| | || |||||| || || ||||||| | | ||| |||||||| Sbjct 5494 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5553 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTCC 69752 | ||||| |||||||||||||| | ||||| || |||| ||| || ||| ||| Sbjct 5554 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGA-TCCTTTTCTTTTTCCTCC 5612 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCAT 69811 || ||||||| ||||| || || | ||| | ||||| | ||| || | |||| || | Sbjct 5613 ACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGT 5671 Query 69812 TAGATTTACCATTTGTTC--CAGAAATATAACTTCCTCTTGCGCGAATAT-TACTAATAG 69868 | ||| |||||||||||| | | |||| | || | | | || |||| | || | | Sbjct 5672 TTGATATACCATTTGTTCCTCTTATATATGAATT--TTGTCCACGTATATCTTGTACT-G 5728 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 || ||| || || ||||| ||||| || | |||||| | || ||||| ||| | | Sbjct 5729 CTACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAA 5788 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 | || || || ||| || |||| || | |||||| ||||| || || | | Sbjct 5789 TTCCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTG-TGGTCT- 5846 Query 69989 TAGT-TCCC-GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 | || |||| | |||||||||||| || | ||| || || || |||||| || | ||| Sbjct 5847 TGGTGTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAG 5906 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCAT 70106 || |||||||| | ||| ||||| ||| ||| || || || | || | ||| Sbjct 5907 ATGATATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCAT 5966 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 | || ||| || |||| ||||| |||||||||| || ||| | ||||| |||| Sbjct 5967 TATCAAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTC 6026 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 | |||||||| |||||||| | || ||| || | | ||| ||| | ||| Sbjct 6027 TAACGTTTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATT 6086 Query 70227 TAGTTTATCCTTATATT 70243 || | ||||||||| || Sbjct 6087 TAATCTATCCTTATGTT 6103 >seq598 Length=26426 Score = 277 bits (306), Expect = 2e-69 Identities = 609/903 (67%), Gaps = 26/903 (3%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || ||| || || ||| |||| ||||| || ||||| || ||||| |||| Sbjct 2472 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2531 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 | || || ||||| ||| ||| ||||| |||||| | | ||||| | | || Sbjct 2532 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACC 2591 Query 39433 TAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 ||| ||| ||| |||| |||||| ||||||||||| || ||| | | | Sbjct 2592 TAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGA 2648 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||| || || | | | ||||||| || || || | |||| | || || Sbjct 2649 ATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAAC 2708 Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGC---AATAAATGTTT 39606 || ||| | | || | | || || || || | || |||||| | Sbjct 2709 AGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---T 2765 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 | | ||||| || || || ||||| || |||||||||||||||| ||| ||| Sbjct 2766 ATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACT 2825 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 ||| || |||||| | | | | | ||||| | |||||| || ||| |||| || Sbjct 2826 AAAAGTAAGTCCATGTAATTTATTCTGTTTTTTAAACCAAAAAATTGCACAAAAACTACC 2885 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA---ACTTGT 39783 | ||| | || ||||| || |||| ||| |||| ||| ||| | | | |||| Sbjct 2886 ACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGT 2945 Query 39784 ATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 |||||| |||||| || |||||| ||||| ||||| || || || |||| Sbjct 2946 ATCATT---TATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTC 3002 Query 39844 TATAGCATTAAAGAGAT---AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAA 39900 ||||||| ||| | || || ||| || |||| ||||| | ||| |||| || | Sbjct 3003 AATAGCATGAAATAAATTTAAACGTTCTTTATCA---TCTTTTATATAATTATCAATAAG 3059 Query 39901 CAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT 39960 | ||| ||| |||||||||| |||||||| | || || |||||| |||||| | | Sbjct 3060 TAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTT 3119 Query 39961 TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC-GCCAAATTTTCATTCACTATTC 40019 ||||| |||||||| || ||| |||| ||| | ||||||||||| ||||| | Sbjct 3120 AGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATAC 3178 Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079 |||||||||| ||||||||||| || |||||||||||||||| |||||||| | | Sbjct 3179 CATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTA 3238 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 |||| | | || || | ||| |||||| ||||| |||||||||||||||||| || | Sbjct 3239 ATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATG 3298 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 | ||||| ||||| || | | ||| | ||| | ||| |||||| | | ||||| Sbjct 3299 CTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGATACAATGTAAATC 3358 Query 40200 TAT 40202 ||| Sbjct 3359 TAT 3361 >seq1515 Length=1449 Score = 196 bits (216), Expect = 7e-45 Identities = 224/301 (74%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| ||| |||| ||||| | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || ||||| ||||| | | |||||| | |||||||||||| ||||| | Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACT 475 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 ||||||||||| ||||||||||||||||| ||||||||||| || |||||||| || Sbjct 474 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 415 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 ||||| |||||||| | ||||| | |||| || | ||| |||||| ||||| Sbjct 414 AAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTAT 355 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATA 40176 ||||||||| |||||||| || || || || ||||| || | ||||||| ||| |||| Sbjct 354 TTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 295 Query 40177 T 40177 | Sbjct 294 T 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686889678176280