Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq598 212 5e-50 seq254 176 4e-39 seq139 156 3e-33 seq1515 102 6e-17 >seq598 Length=26426 Score = 212 bits (234), Expect = 5e-50 Identities = 586/881 (67%), Gaps = 33/881 (4%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||| ||||||| ||| | || | ||| | | || ||||||||| | || ||||||| Sbjct 3349 TGTATCCAATTTTATACCCAGATGTTTGGGATTTTTATAAAAAAGCAGAAGCATCATTTT 3290 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA---TTAAAAC 43823 ||||||| |||||| | ||||| | | || ||| | ||| ||| | ||||| Sbjct 3289 GGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATT---TTGAAAAATTAAATG 3233 Query 43824 CACAAGAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGAT 43881 | | |||||||||||||| | | | ||||| || |||||||| || || || || || Sbjct 3232 AAAATGAAAAACATTTTATTAAACAT--GTTTTAGCATTTTTTGCAGCTAGTGATGGTAT 3175 Query 43882 AGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATG 43941 ||| |||||||||| |||| |||| |||||||||| | ||||||| | Sbjct 3174 AGTATTAGAAAATTTGGCTAGTAAGTTTTTAAGAGAAGTTCAAATTACAGAAGCTAAAAA 3115 Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||||| |||||||| || ||||||| || ||||| |||| ||||||| | || || Sbjct 3114 ATTTTACTCATTTCAAATAGCAGTAGAAAACATACATTCAGAAACGTACAGTTTACTTAT 3055 Query 44002 AGATACGTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAG 44060 |||| || || ||||||| | || | | | | || ||| |||| || |||| Sbjct 3054 TGATAATTATATAAAAGATGATAAAGA-ACGTTTAAATTTATTTCATGCTATTGAAAATA 2996 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 |||| || |||| |||||||| ||||| |||||||||||| | |||| | Sbjct 2995 TACCAGCAGTTAAGAATAAAGCACTTTGGGCTGCAAAATGGATAAATGATACAAATTCAT 2936 Query 44121 TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTG 44180 ||| |||| || |||| || |||| ||| ||||| || | ||| || | |||| Sbjct 2935 TTGCAGAAAGAATTGTAGCAAATGCATGTGTTGAAGGTATACTATTTAGTGG-TAGTTTT 2877 Query 44181 CG-GCCATATTTTGGTTAAAGAAACGAGGTTTGA-TGCCTGGGTTGACGTTTTCAAATGA 44238 | || || |||||||| || |||| || | | | | ||| | || ||| ||||| Sbjct 2876 TGTGCAATTTTTTGGTTTAAAAAAC-AGAATAAATTACATGGACTTACTTTTAGTAATGA 2818 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT 44298 |||| ||| | |||||||| |||||| |||||| ||| || || | | | | Sbjct 2817 ACTAATTAGTAGAGATGAAGGATTACATACAGATTTTAATTGTTTAATATATAG---TTT 2761 Query 44299 AGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAG 44356 | ||| |||| || |||| ||| | |||||||| ||| || || | Sbjct 2760 ATTAGAAAATAA--ATTACCAGAAGAAGTTGTTAAAAATATTGTTAAAGAAGCTGTTGAA 2703 Query 44357 ATAGAACAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAAC 44414 | ||| | || |||| | | | ||||| ||||||| || |||||| | Sbjct 2702 GTTGAAAGATCTTTCATATGTGA--ATCTCTACCTTGTGATTTAATTGGGATGAATTCAA 2645 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTT 44471 || ||| || ||||| |||| | |||||||| ||| |||||| | |||| Sbjct 2644 GATTAATGTCTCAGTATATAGAATTTGTAGCAGATCGATTA---TTGGAATGTTTAGGTT 2588 Query 44472 GCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 | ||| | | || | |||| || ||| ||| ||||| ||||| | ||| Sbjct 2587 GTTCAAAAATTTTTTATGCAAAAAATCCTTTTAATTGGATGGATTTAATTTCTCTACAAG 2528 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | ||||||||||||||||||||||| |||| || |||||| Sbjct 2527 GAAAAACAAACTTTTTTGAAAAACGTGTTGCTGATTATCAG 2487 >seq254 Length=19931 Score = 176 bits (194), Expect = 4e-39 Identities = 379/561 (68%), Gaps = 23/561 (4%) Strand=Plus/Plus Query 19319 TTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTG 19378 ||||||| | || |||||||||| |||||| | || ||||| || || ||| | Sbjct 16429 TTAAACAGCTAGGTATTAAACATGTTAAGGGACTTATACTGTATGGCCCTCCAGGTACAG 16488 Query 19379 GAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAA 19435 ||||||||||||| || ||| | | ||||| ||| | ||| | |||| |||| Sbjct 16489 GAAAAACATTAATCGCAAGACAGATAGGTAAAACATTAAATGCAAGAGAACCA---AAAA 16545 Query 19436 TTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGAC 19495 || | || ||||| ||||| ||||||||||||||||| || || ||||||||| | ||| Sbjct 16546 TTATTAACGGTCCAGAAATATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTCGAA 16605 Query 19496 GTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TTGC 19552 ||| ||| || |||||| |||| | |||| || | | |||| |||| || | Sbjct 16606 ATTTATTTAAAGATGCTGAAATAGAATATAAAC--AAAGTGGGGAAAA-TTCTTTATTAC 16662 Query 19553 ACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTCTG 19603 | ||||| |||||||| ||| | || || || |||| |||||||| ||| Sbjct 16663 ATATTATTATACTAGACGAAATTGATGCTATATGTAGACAAAGAGGAAATTCCTCTTCCA 16722 Query 19604 GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 || | ||||||| |||| | | | || ||||| | || || ||| | || || || | Sbjct 16723 GTAGTACTGGAGTAAATGATAGTATAGTGAATCAGTTACTTTCCAAAATTGATGGAGTGA 16782 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 | | |||||||| | |||| || ||||| ||||| | || | || || | Sbjct 16783 ATAGTTTAAATAATATACTTCTTATAGGTATGACAAATAGGATAGATCTTATTGATGAAG 16842 Query 19724 CCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT-TACCCGATGAATGT 19782 | || ||| |||| || |||| ||| || | || |||| || || | || || | Sbjct 16843 CATTGTTAAGACCTGGAAGGTTTGAATTACATATAGAAA-TATCTCTTCCAAATAAGGAA 16901 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 ||| | | |||| ||||| ||||||||| || ||| || ||| ||| |||| | Sbjct 16902 GGAAGAATTCAAATATTAAATATACATACAAAAAATATGAGAAAAAGTAATAAATTAAGT 16961 Query 19843 GACGATGTAGATCTAGAAGAA 19863 ||||| || |||||||| Sbjct 16962 CCAGATGTTAATATAGAAGAA 16982 >seq139 Length=46061 Score = 156 bits (172), Expect = 3e-33 Identities = 284/416 (68%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||||| || | | |||| | ||||| ||||||| ||||| | | ||||||||||||| Sbjct 37388 GATAGAGAAGTAAATGATTTAGGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCT 37329 Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 ||||| | |||||| | ||||| ||||||||||| |||||| || | || Sbjct 37328 GAATATACAAATATGTATGATAATTATGATAATAAAGGAATTGATCAACTAAAAAATATT 37269 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 ||| || ||| ||| || || || || | || || ||||| || |||||| | Sbjct 37268 ATAAATTTGATAAAAAATGAACCATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTA 37209 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | ||| | || |||||||| |||||||||||| | ||||| || ||||| ||| | Sbjct 37208 AAGGATTTGGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTC 37149 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 |||| || | |||||| |||||||| |||| |||| | || || || || || Sbjct 37148 GATGGGAAATTATCATGTATCATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCC 37089 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || || || || ||| | | |||| || ||| |||| || || || ||| || Sbjct 37088 TTCAATATTGCCTCTTACTCAATTTTCACCTACATGCTTGCTCAAGTATGTAACTTACAA 37029 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 |||| ||||| | ||| |||||| ||| || || || | ||||| ||||| Sbjct 37028 CCTGCAGAATTCATACACGTTTTAGGAAATGCTCACATATATAACAATCATATAGA 36973 >seq1515 Length=1449 Score = 102 bits (112), Expect = 6e-17 Identities = 217/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 ||| ||| ||||| ||| ||||| | | || |||||||| | || ||||||||||| Sbjct 285 TCCTATTATATATCCTGAAGTATGGAATTTTTATAAAAAAGCTGAAGCCTCATTTTGGAC 344 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAA 43828 || |||||| | ||||| | | || || | || ||| | |||||| | | Sbjct 345 TGCTGAAGAAATAGATTTATCAAGTGATTTGAAAGACTTTGAAAA--ATTAAATGTAAAT 402 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 ||||||||||||||| || || || |||||||| || || || || ||||| Sbjct 403 GAAAAACATTTTATAAAACATGTGTTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTA 462 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 |||||||||| |||| ||| ||| || ||| || ||||| | |||||| Sbjct 463 GAAAATTTGGCTAGTAAATTTTTAAGAGAGGTACAAATAATTGAAGCTAAAAAGTTTTAT 522 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 |||||||| || | |||||||| || || |||| || ||| | | || |||| Sbjct 523 TCTTTTCAAATAGCTGTTGAAAATATACACTCTGAAACATATAGTTTATTAATTGATAAT 582 Query 44009 TACATCAAAGATGGGCACGAGA 44030 || || || |||| | | |||| Sbjct 583 TATATTAAGGATGAGAAGGAGA 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445212423135