Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq546 187 2e-42 >seq546 Length=57643 Score = 187 bits (206), Expect = 2e-42 Identities = 813/1263 (64%), Gaps = 50/1263 (4%) Strand=Plus/Plus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || ||||| || || |||| || |||||||| |||| ||| | || | || || ||| Sbjct 4363 TGGTCAATGAAGGCACCCCGATCGGCAGCCATATCGATGATGTTCTTCTGCTTGATTTCC 4422 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCA-ATCGATTGAACGCT 130674 ||| | |||||||| || ||| ||| || | ||||| ||| || | || || || Sbjct 4423 CAAACAGTCTTGTAGAGCTCCTTAAGGTCGCTAGGTATTT-CGCTTATATACTGGACACT 4481 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAA 130733 ||| |||| || |||| || |||| ||| || ||| | | |||| | | | | Sbjct 4482 ACCATTGTGAGCAATAAGTT-GTTGTTTCATGTCTTCATCCCAGAGTCCACGATCAAATA 4540 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||| | |||||| ||| | | || || ||| || || | |||| || Sbjct 4541 AGTCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGT 4600 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 |||| ||||| ||| |||||||||| ||||| ||||| || ||||| |||| |||| || Sbjct 4601 AAATATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATG 4660 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | || ||||| | | || || | | |||||| | Sbjct 4661 CAGTAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTT 4720 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTG---TTCCACATATCAAATT 130970 | | |||| ||||| ||| | | || | || || |||||||||||||||| Sbjct 4721 TAAGTTCAGTCCAATTCCA---ATATTTATTATCAACCTTTATATTCCACATATCAAATT 4777 Query 130971 GTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAG 131030 | || || |||| || || ||||| ||| | ||||| || | || | | ||| Sbjct 4778 GAAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAG 4837 Query 131031 CCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTA 131090 | | || | ||| || || | ||||| || ||||| |||| |||||||| Sbjct 4838 CTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTA 4897 Query 131091 ATTGTTTCGCTTGGT-TGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 ||| ||| |||| | || | ||||||||| || | | | ||||| | || || | Sbjct 4898 ATTCTTTTGCTTCATCTGAT-TCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4956 Query 131150 CCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACAT-TTACGCGAACATTCGGT 131208 || |||| |||| || | ||||||||| || || || || | | ||| | Sbjct 4957 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTC----AGCTTCTTT 5012 Query 131209 G---GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGAC 131265 |||||| || | || || ||||||| |||||| | | | ||||| || | Sbjct 5013 AACAGGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAA- 5071 Query 131266 GCTTTTCA----ATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTA 131321 ||||| |||| | |||| |||| | |||| | |||||||| | || Sbjct 5072 ---TTTCATATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATA 5128 Query 131322 CACATATTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAAT 131379 | || || || | |||||||| || ||| || | || ||| | | || Sbjct 5129 AAGCAATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGT--ATATTCGATTAT 5186 Query 131380 TTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATT 131439 ||| || | |||||| | || || || || ||||||| |||||| ||||||||| Sbjct 5187 TTCACAACATAGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATT 5246 Query 131440 CACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGT 131498 ||||| || || |||| ||| || || || ||||| | |||| ||| | ||| Sbjct 5247 -ACATGAATCTTTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAG 5305 Query 131499 --ATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTA--TTGGCCGCGTTTTTCGTAA 131554 | | | | | || || | ||| || | || || || | || ||| || Sbjct 5306 CAAACCATAAATCTTGCGCTAATACAGTTTTTTTTCCTAAATTTTC----TTCTTCATAT 5361 Query 131555 TTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGA---ACTGTCCAAATTGGGACATTCG 131611 ||||| || || ||||||| | || || | | ||| ||| |||||||| Sbjct 5362 TTTTCATATAATTTTTCAAATTCTTCACCCCATGTTTCACTT---AAACCTGGACATTCA 5418 Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671 | |||||||||| | ||| || | || ||||| |||||||||||||| || Sbjct 5419 TTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGT 5478 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-t 131730 ||||| | || || || | |||||||||| | |||||| || |||| ||||||| | Sbjct 5479 ACCCAAACAGCATAAAATAAATCTCTAGCTCGTAATTCTTCTTTA-CCATGATTTTTTCT 5537 Query 131731 CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC 131790 ||||| || ||| || || || || | |||||| ||||| | ||| ||||| | || || Sbjct 5538 CAAATCTAGAAACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCC 5597 Query 131791 TTT 131793 ||| Sbjct 5598 TTT 5600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424922866616424