Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq546 96.9 4e-15 >seq546 Length=57643 Score = 96.9 bits (106), Expect = 4e-15 Identities = 588/932 (63%), Gaps = 13/932 (1%) Strand=Plus/Plus Query 110869 CCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGA 110928 |||||| ||||| ||||| | |||||| || ||| ||| ||| | | |||||| Sbjct 4764 CCACATATCAAATTGAAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTT 4823 Query 110929 ACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 || | || ||| ||||| | || | || | | || | |||||| ||||||| Sbjct 4824 CCCATAAATTTGAGCTAATTCCATAGA-CATTTCTAATGCAGCATAATACATAGTTTCAA 4882 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAA 111047 | || | ||| | || || ||||||||||| || | | || | | | |||| Sbjct 4883 AAATTCTTTTATTTAATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAA 4942 Query 111048 ATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTT 111106 || ||| || | ||||| ||||| | || || ||||| |||| | || || |||| Sbjct 4943 ATGTATCAGCTAATCCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTT 5002 Query 111107 CGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA 111166 | || | ||| |||||| ||||||| || || | | || || |||| | |||| | Sbjct 5003 C-AGCTTCTTTAACAGGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATA 5061 Query 111167 ATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 111226 || || || ||||||| | ||||| | ||| ||| | | ||| || ||| | Sbjct 5062 ATTTTAGTAATTTCATATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAAT 5121 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 || | || || ||||| || || |||||||| ||||| ||| || || Sbjct 5122 TTACATAAAGCAATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCG 5181 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | ||||| ||||| || || ||||| ||||| ||||| ||||| ||| || Sbjct 5182 ATTATTTCACAACATAGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTA 5241 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA-TTTG-A 111404 || || | ||| || || | ||| || || || || || | | ||| |||| | Sbjct 5242 GCATTACATGAATCTTTATACAACATATATGGTACACCTGTTTC--TATTTGACTTTGTA 5299 Query 111405 GAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT 111464 |||||| ||| | ||| ||| |||| | || | || | || | Sbjct 5300 AAATAGCAAACCATAAATCTTGCGCTAATACAGTTTTTTTTCCTAAATTTTCTTCTTCAT 5359 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 111524 | ||| || | |||||| || |||||| | || | |||||| | | Sbjct 5360 ATTTTTCATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCAT 5419 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 |||||| | | | ||| | | ||| | ||| | ||||| || | ||||| | Sbjct 5420 TTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTA 5479 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 ||| | | |||| | ||||||| || ||||| | ||| || || || | Sbjct 5480 CCCAAACAGCATAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCA 5539 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 | || || ||||| | ||||| | |||||||| |||| ||| ||||| | ||||| | Sbjct 5540 AATCTAGAAACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTT 5599 Query 111705 TTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 ||| | ||| |||||| |||||| | ||||| ||||||| || | | ||||| Sbjct 5600 TTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTG 5659 Query 111762 G-AATAATACCATCTGATTGACCATTTGTCCC 111792 | | |||| || | |||| ||||||||| || Sbjct 5660 GTACTAAT-CCGTTTGATATACCATTTGTTCC 5690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014517159200