Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq546 159 4e-34 >seq546 Length=57643 Score = 159 bits (176), Expect = 4e-34 Identities = 594/928 (64%), Gaps = 5/928 (1%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGC 104571 || ||||||||| |||| | || |||| | |||||| | | || ||||||| ||||| Sbjct 5690 GGAACAAATGGTATATCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACGATACAGC 5632 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 | |||||| |||||| ||| | |||| ||||| | ||||| ||| |||| || Sbjct 5631 TAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACC 5572 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||| | ||||| | ||||| || || ||| | || || ||| | || || Sbjct 5571 ATGGCATTCAGATATATTTGAGTTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATT 5512 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 || | ||| | || | ||| | ||| | |||||| | || ||||| |||||| | Sbjct 5511 ACGAGCTAGAGATTTATTTTATGCTGTTTGGGTACCAGATTTGTTTATGAAAAGAGTTAA 5452 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 || | | |||||| | | | |||||| | | || ||| | || | Sbjct 5451 AGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTGAAACATG 5392 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 |||||| || |||||| | || ||| || || |||||| | | | || Sbjct 5391 GGGTGAAGAATTTGAAAAATTATATGAAAAATATGAAGAAGAAAATTTAGGAAAAAAAAC 5332 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || ||| ||| | ||| |||||| | | ||||| || || ||| ||| Sbjct 5331 TGTATTAGCGCAAGATTTATGGTTTGCTATTTTACAAAGTCAAATAGAAACAGGTGTACC 5272 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 ||| ||| | || ||||| | ||||| || ||||||||| ||||| || || Sbjct 5271 ATATATGTTGTATAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAGGGACAAT 5212 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 || || ||||| ||| ||||| | |||| |||| |||||| ||||| Sbjct 5211 TAAATGTAGTAATCTATGTTGTGAAATAATCGAATATACATCACCAGATGAAGTTGCTGT 5152 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 |||||| | ||||| || ||| | || | ||| ||| |||| | ||| | ||| | Sbjct 5151 TTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGATACAGAAAAAAAAATGTTTAA 5092 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || | ||||| | | ||| |||| |||| | | || | ||| || ||| | |||| || Sbjct 5091 TTTTAAAAAATTATATGAAATTACTAAAATTATTACGAGAAATTTAGACAAAATTATAGA 5032 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 ||||||| ||| || ||| | ||| | ||| || | ||||| | ||||| || Sbjct 5031 AAGAAATTATTATCCTGTTAAAGAAGCTGAAAGATCAAACAGAAGACATAGACCAATAGG 4972 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 | ||||| || || | || ||| ||| || |||| | | | | || || || Sbjct 4971 AATTGGTGTACAAGGATTAGCTGATACATTTATGCTTTTAAGATATCCTTACGAATCAGA 4912 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||||| || ||| | ||| | || ||||| || |||||| | || || | || Sbjct 4911 TGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTATTATGCTGCATTAGAAAT 4852 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 | | || || || | || |||| ||||||| | | ||| ||| ||||||| Sbjct 4851 GTCTATGGAATTAGCTCAAATTTATGGGAAATATGAATCTTATGAAGGTAGTCCAGCTAG 4792 Query 105409 ACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||||| | |||||||||||||||||| Sbjct 4791 CCAAGGTATTCTTCAATTTGATATGTGG 4764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583244563477480