Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq546 114 1e-20 seq380 105 8e-18 >seq546 Length=57643 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || || || | || ||||||||| |||| ||||| ||| | ||||| ||| Sbjct 56657 GGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAAA 56598 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| || ||||| ||||| || || || ||||| | |||| ||||| || |||||| Sbjct 56597 ATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCAA 56538 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || |||| | || || ||| ||||| ||||||||||||| ||| | ||| || Sbjct 56537 TTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTTACATTTA 56478 Query 27613 GTCTTGCG 27620 ||||| || Sbjct 56477 GTCTTACG 56470 >seq380 Length=37146 Score = 105 bits (116), Expect = 8e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | | || || || ||| | ||||||||||| |||| Sbjct 27203 AATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGT 27262 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || || ||||||||||| ||||| | |||||| | ||| | Sbjct 27263 AGATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGACGA 27322 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||||||||| || || ||| | || || || || || ||||| Sbjct 27323 ACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTATAA 27382 Query 27585 TGTCCAAAAGGAATCCACTCT 27605 | |||| || ||||||||||| Sbjct 27383 TATCCAGAAAGAATCCACTCT 27403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294523984240