Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016-
06-16] 2,227 sequences; 38,010,039 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq546 87.8 1e-12
>seq546
Length=57643
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | || || || || || | ||| || || || ||||||||||||||
Sbjct 55996 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 56055
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||||| | ||||| | ||| || || ||||||||||| | || || || || ||
Sbjct 56056 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 56115
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657
| ||| ||||| ||| ||| ||| | ||||| | | || || | || | || |
Sbjct 56116 ATTCCTTCCTTATCT-TGAATTTTCGCCTTAACATTCTCAATG-GTATCCGATGATTCAA 56173
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || || || ||||||||||| ||||||||
Sbjct 56174 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56222
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | || || || || || | ||| || || || ||||||||||||||
Sbjct 55765 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 55824
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||||| | ||||| | ||| || || ||||||||||| | || || || || ||
Sbjct 55825 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 55884
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657
| ||| ||||| ||| ||| ||| | || || | | || || | || | || |
Sbjct 55885 ATTCCTTCCTTATCT-TGAATTTTCGCCTTTACATTCTCAATG-GTATCCGATGATTCAA 55942
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || || || ||||||||||| ||||||||
Sbjct 55943 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 55991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314721057746891
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |