Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq546 131 4e-25 >seq546 Length=57643 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | ||| | ||| || ||||| |||||||||||||| | | || ||||| Sbjct 55776 TCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCC 55835 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| ||||| || || | | ||| || || || || | ||||||||| Sbjct 55836 ATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTT 55895 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || ||||| || || |||||| ||||| ||||| Sbjct 55896 ATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGAT 55955 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || ||||| | ||||||| Sbjct 55956 GGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | ||| | ||| || ||||| || ||||||||||| | | || ||||| Sbjct 56007 TCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCC 56066 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| ||||| || || | | ||| || || || |||| ||||||||| Sbjct 56067 ATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTT 56126 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || ||||| || || |||||| ||||| ||||| Sbjct 56127 ATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGAT 56186 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || ||||| | ||||||| Sbjct 56187 GGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | || | ||| || ||||| |||||||||||||| | | || ||||| Sbjct 56238 TCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCC 56297 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| ||||| || || | | ||| || || || || | ||||||||| Sbjct 56298 ATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTT 56357 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || ||||| || || |||||| ||||| ||||| Sbjct 56358 ATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGAT 56417 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || ||||| | ||||||| Sbjct 56418 GGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | || | ||| || || ||||||||||||||||| | || ||||| Sbjct 56469 TCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAATAATGTTCTTCC 56528 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| ||||| || || | | ||| || || || || | ||||||||| Sbjct 56529 ATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTT 56588 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || ||||| || || ||||| || | ||||| Sbjct 56589 ATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACATCCAAGGTGAT 56648 Query 211079 CGTCTTTCC 211087 ||| ||||| Sbjct 56649 CGTTTTTCC 56657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159118925408855